Commits for markd
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v238_base to v239_preview (2010-08-17 to 2010-08-24) v239
- fix bug where insertions between multiple bases of stop codon generated incorrect frame. Provide explicit control over use of gene_id or gene_name for name2 column
- src/hg/lib/genePred.c - lines changed 136, context: html, text, full: html, text
- src/utils/gtfToGenePred/gtfToGenePred.c - lines changed 6, context: html, text, full: html, text
- src/utils/gtfToGenePred/tests/expected/dups.out - lines changed 1, context: html, text, full: html, text
- src/utils/gtfToGenePred/tests/expected/ensembl.gp - lines changed 2, context: html, text, full: html, text
- src/utils/gtfToGenePred/tests/expected/geneNameAsName2.gp - lines changed 2, context: html, text, full: html, text
- src/utils/gtfToGenePred/tests/expected/splitStop.gp - lines changed 2, context: html, text, full: html, text
- src/utils/gtfToGenePred/tests/input/splitStop.gtf - lines changed 34, context: html, text, full: html, text
- src/utils/gtfToGenePred/tests/makefile - lines changed 18, context: html, text, full: html, text
- added support for importing CCDS public notes into a table
- src/hg/inc/ccdsNotes.h - lines changed 66, context: html, text, full: html, text
- src/hg/lib/ccdsNotes.as - lines changed 7, context: html, text, full: html, text
- src/hg/lib/ccdsNotes.c - lines changed 148, context: html, text, full: html, text
- src/hg/lib/ccdsNotes.sql - lines changed 13, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/genbank.tbls - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/genbank/src/ccds/ccdsMkTables.c - lines changed 162, context: html, text, full: html, text
- src/hg/makeDb/genbank/src/dbload/gbDbLoadStep - lines changed 1, context: html, text, full: html, text
- fixed bugs in ccdsNotes load
- src/hg/makeDb/genbank/src/ccds/ccdsMkTables.c - lines changed 2, context: html, text, full: html, text
- add CCDS public notes to the CCDS details page
- src/hg/hgc/ccdsClick.c - lines changed 87, context: html, text, full: html, text
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