662c142fd7755be0eadbdfa5391b9548bc7f4ccd tdreszer Mon Aug 23 16:32:11 2010 -0700 Got popup box for descrition in findTracks working properly diff --git src/hg/hgTracks/searchTracks.c src/hg/hgTracks/searchTracks.c index 10c57f6..95573ab 100644 --- src/hg/hgTracks/searchTracks.c +++ src/hg/hgTracks/searchTracks.c @@ -1,705 +1,704 @@ /* Track search code used by hgTracks CGI */ #include "common.h" #include "searchTracks.h" #include "hCommon.h" #include "memalloc.h" #include "obscure.h" #include "dystring.h" #include "hash.h" #include "cheapcgi.h" #include "hPrint.h" #include "htmshell.h" #include "cart.h" #include "hgTracks.h" #include "web.h" #include "jksql.h" #include "hdb.h" #include "trix.h" #include "jsHelper.h" static char const rcsid[] = "$Id: searchTracks.c,v 1.11 2010/06/11 18:21:40 larrym Exp $"; #define ANYLABEL "Any" #define METADATA_NAME_PREFIX "hgt.metadataName" #define METADATA_VALUE_PREFIX "hgt.metadataValue" static int gCmpGroup(const void *va, const void *vb) /* Compare groups based on label. */ { const struct group *a = *((struct group **)va); const struct group *b = *((struct group **)vb); return strcmp(a->label, b->label); } static int gCmpTrack(const void *va, const void *vb) /* Compare tracks based on longLabel. */ { const struct slRef *aa = *((struct slRef **)va); const struct slRef *bb = *((struct slRef **)vb); const struct track *a = ((struct track *) aa->val); const struct track *b = ((struct track *) bb->val); return strcmp(a->longLabel, b->longLabel); } // XXXX make a matchString function to support "contains", "is" etc. and wildcards in contains // ((sameString(op, "is") && !strcasecmp(track->shortLabel, str)) || static boolean isNameMatch(struct track *track, char *str, char *op) { return str && strlen(str) && ((sameString(op, "is") && !strcasecmp(track->shortLabel, str)) || (sameString(op, "is") && !strcasecmp(track->longLabel, str)) || (sameString(op, "contains") && containsStringNoCase(track->shortLabel, str) != NULL) || (sameString(op, "contains") && containsStringNoCase(track->longLabel, str) != NULL)); } static boolean isDescriptionMatch(struct track *track, char **words, int wordCount) // We parse str and look for every word at the start of any word in track description (i.e. google style). { if(words) { // We do NOT lookup up parent hierarchy for html descriptions. char *html = track->tdb->html; if(!isEmpty(html)) { /* This probably could be made more efficient by parsing the html into some kind of b-tree, but I am assuming that the inner html loop while only happen for 1-2 words for vast majority of the tracks. */ int i, numMatches = 0; html = stripRegEx(html, "<[^>]*>", REG_ICASE); for(i = 0; i < wordCount; i++) { char *needle = words[i]; char *haystack, *tmp = cloneString(html); boolean found = FALSE; while((haystack = nextWord(&tmp))) { char *ptr = strstrNoCase(haystack, needle); if(ptr != NULL && ptr == haystack) { found = TRUE; break; } } if(found) numMatches++; else break; } if(numMatches == wordCount) return TRUE; } } return FALSE; } static int getTermArray(struct sqlConnection *conn, char ***terms, char *type) // Pull out all term fields from ra entries with given type // Returns count of items found and items via the terms argument. { struct sqlResult *sr = NULL; char **row = NULL; char query[256]; struct slName *termList = NULL; int i, count = 0; char **retVal; safef(query, sizeof(query), "select distinct val from metaDb where var = '%s'", type); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { slNameAddHead(&termList, row[0]); count++; } sqlFreeResult(&sr); slSort(&termList, slNameCmpCase); count++; // make room for "Any" AllocArray(retVal, count); retVal[0] = cloneString(ANYLABEL); for(i = 1; termList != NULL;termList = termList->next, i++) { retVal[i] = cloneString(termList->name); } *terms = retVal; return count; } static struct slName *metaDbSearch(struct sqlConnection *conn, char *name, char *val, char *op) // Search the assembly's metaDb table for var; If name == NULL, we search every metadata field. // Search is via mysql, so it's case-insensitive. { struct slName *retVal = NULL; char query[256]; struct sqlResult *sr = NULL; char **row = NULL; if(sameString(op, "contains")) if(name == NULL) safef(query, sizeof(query), "select obj from metaDb where val like '%%%s%%'", val); else safef(query, sizeof(query), "select obj from metaDb where var = '%s' and val like '%%%s%%'", name, val); else if(name == NULL) safef(query, sizeof(query), "select distinct obj from metaDb where val = '%s'", val); else safef(query, sizeof(query), "select obj from metaDb where var = '%s' and val = '%s'", name, val); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { slNameAddHead(&retVal, row[0]); } sqlFreeResult(&sr); return retVal; } static int metaDbVars(struct sqlConnection *conn, char *** metaValues) // Search the assemblies metaDb table; If name == NULL, we search every metadata field. { char query[256]; struct sqlResult *sr = NULL; char **row = NULL; int i; struct slName *el, *varList = NULL; char **retVal; safef(query, sizeof(query), "select distinct var from metaDb"); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) slNameAddHead(&varList, row[0]); sqlFreeResult(&sr); retVal = needMem(sizeof(char *) * slCount(varList)); slNameSort(&varList); for (el = varList, i = 0; el != NULL; el = el->next, i++) retVal[i] = el->name; *metaValues = retVal; return i; } // FIXME: This code is duplicated in imageV2!!! // FIXME: This code is duplicated in imageV2!!! static void trackJson(struct dyString *trackDbJson, struct track *track, int count) { // add entry for given track to the trackDbJson string if(count) dyStringAppend(trackDbJson, "\n,"); dyStringPrintf(trackDbJson, "\t%s: {", track->track); if(tdbIsSuperTrackChild(track->tdb)) { dyStringPrintf(trackDbJson, "\n\t\tparentTrack: '%s',", track->tdb->parent->track); dyStringPrintf(trackDbJson, "\n\t\tparentLabel: '%s',", track->tdb->parent->shortLabel); } else if(tdbIsCompositeChild(track->tdb)) { struct trackDb *parentTdb = trackDbCompositeParent(track->tdb); dyStringPrintf(trackDbJson, "\n\t\tparentTrack: '%s',", parentTdb->track); dyStringPrintf(trackDbJson, "\n\t\tparentLabel: '%s',", parentTdb->shortLabel); } dyStringPrintf(trackDbJson, "\n\t\ttype: '%s',", track->tdb->type); if(sameWord(track->tdb->type, "remote") && trackDbSetting(track->tdb, "url") != NULL) dyStringPrintf(trackDbJson, "\n\t\turl: '%s',", trackDbSetting(track->tdb, "url")); dyStringPrintf(trackDbJson, "\n\t\tshortLabel: '%s',\n\t\tlongLabel: '%s',\n\t\tcanPack: %d,\n\t\tvisibility: %d\n\t}", javaScriptLiteralEncode(track->shortLabel), javaScriptLiteralEncode(track->longLabel), track->canPack, track->limitedVis); } // FIXME: This code is duplicated in imageV2!!! // FIXME: This code is duplicated in imageV2!!! void doSearchTracks(struct group *groupList) { struct group *group; char *groups[128]; char *labels[128]; int numGroups = 1; groups[0] = ANYLABEL; labels[0] = ANYLABEL; char *currentTab = cartUsualString(cart, "hgt.currentSearchTab", "simpleTab"); char *nameSearch = cartOptionalString(cart, "hgt.nameSearch"); char *descSearch; char *groupSearch = cartOptionalString(cart, "hgt.groupSearch"); boolean doSearch = sameString(cartOptionalString(cart, searchTracks), "Search"); struct sqlConnection *conn = hAllocConn(database); boolean metaDbExists = sqlTableExists(conn, "metaDb"); struct slRef *tracks = NULL; int numMetadataSelects, tracksFound = 0; int numMetadataNonEmpty = 0; char **metadataName; char **metadataValue; struct hash *parents = newHash(4); boolean simpleSearch; struct trix *trix; char trixFile[HDB_MAX_PATH_STRING]; char **descWords = NULL; int descWordCount = 0; if(sameString(currentTab, "simpleTab")) { descSearch = cartOptionalString(cart, "hgt.simpleSearch"); simpleSearch = TRUE; freez(&nameSearch); freez(&groupSearch); } else { descSearch = cartOptionalString(cart, "hgt.descSearch"); simpleSearch = FALSE; } getSearchTrixFile(database, trixFile, sizeof(trixFile)); trix = trixOpen(trixFile); getTrackList(&groupList, -2); slSort(&groupList, gCmpGroup); for (group = groupList; group != NULL; group = group->next) { if (group->trackList != NULL) { groups[numGroups] = cloneString(group->name); labels[numGroups] = cloneString(group->label); numGroups++; if (numGroups >= ArraySize(groups)) internalErr(); } } webStartWrapperDetailedNoArgs(cart, database, "", "Track Search", FALSE, FALSE, FALSE, FALSE); hPrintf("<form action='%s' name='SearchTracks' id='searchTracks' method='get'>\n\n", hgTracksName()); hPrintf("<input type='hidden' name='db' value='%s'>\n", database); hPrintf("<input type='hidden' name='hgt.currentSearchTab' id='currentSearchTab' value='%s'>\n", currentTab); hPrintf("<input type='hidden' name='hgt.delRow' value=''>\n"); hPrintf("<input type='hidden' name='hgt.addRow' value=''>\n"); hPrintf("<div id='tabs' style='display:none;'>\n" "<ul>\n" "<li><a href='#simpleTab'><span>Search</span></a></li>\n" "<li><a href='#advancedTab'><span>Advanced Search</span></a></li>\n" "</ul>\n" "<div id='simpleTab'>\n"); hPrintf("<input type='text' name='hgt.simpleSearch' id='simpleSearch' value='%s' size='80'>\n", descSearch == NULL ? "" : descSearch); hPrintf("<br><input type='submit' name='%s' id='searchSubmit' value='Search' style='font-size:14px;'>\n", searchTracks); hPrintf("<input type='submit' name='submit' value='Cancel' style='font-size:14px;'>\n"); hPrintf("</div>\n" "<div id='advancedTab'>\n" "<table>\n"); hPrintf("<tr><td></td><td></td><td></td><td><b>Track Name:</b></td><td align='right'>contains</td>\n"); //char *ops[] = {"is", "contains"}; //char *op_labels[] = {"is", "contains"}; //char *nameOp = cartOptionalString(cart, "hgt.nameOp"); //cgiMakeDropListFull("hgt.nameOp", op_labels, ops, ArraySize(ops), nameOp == NULL ? "contains" : nameOp, NULL); hPrintf("</td>\n<td><input type='text' name='hgt.nameSearch' id='nameSearch' value='%s'></td></tr>\n", nameSearch == NULL ? "" : nameSearch); hPrintf("<tr><td></td><td></td><td>and</td><td><b>Description:</b></td><td align='right'>contains</td>\n"); hPrintf("<td><input type='text' name='hgt.descSearch' id='descSearch' value='%s' size='80'></td></tr>\n", descSearch == NULL ? "" : descSearch); hPrintf("<tr><td></td><td></td><td>and</td>\n"); hPrintf("<td><b>Group</b></td><td align='right'>is</td>\n<td>\n"); cgiMakeDropListFull("hgt.groupSearch", labels, groups, numGroups, groupSearch, NULL); hPrintf("</td></tr>\n"); // figure out how many metadata selects are visible. int delSearchSelect = cartUsualInt(cart, "hgt.delRow", 0); // 1-based row to delete int addSearchSelect = cartUsualInt(cart, "hgt.addRow", 0); // 1-based row to insert after for(numMetadataSelects = 0;;) { char buf[256]; safef(buf, sizeof(buf), "%s%d", METADATA_NAME_PREFIX, numMetadataSelects + 1); char *str = cartOptionalString(cart, buf); if(isEmpty(str)) break; else numMetadataSelects++; } if(delSearchSelect) numMetadataSelects--; if(addSearchSelect) numMetadataSelects++; if(numMetadataSelects) { metadataName = needMem(sizeof(char *) * numMetadataSelects); metadataValue = needMem(sizeof(char *) * numMetadataSelects); int i; for(i = 0; i < numMetadataSelects; i++) { char buf[256]; int offset; // used to handle additions/deletions if(addSearchSelect > 0 && i >= addSearchSelect) offset = 0; // do nothing to offset (i.e. copy data from previous row) else if(delSearchSelect > 0 && i + 1 >= delSearchSelect) offset = 2; else offset = 1; safef(buf, sizeof(buf), "%s%d", METADATA_NAME_PREFIX, i + offset); metadataName[i] = cartOptionalString(cart, buf); if(!simpleSearch) { safef(buf, sizeof(buf), "%s%d", METADATA_VALUE_PREFIX, i + offset); metadataValue[i] = cartOptionalString(cart, buf); if(sameString(metadataValue[i], ANYLABEL)) metadataValue[i] = NULL; if(!isEmpty(metadataValue[i])) numMetadataNonEmpty++; } } if(delSearchSelect > 0) { char buf[255]; safef(buf, sizeof(buf), "%s%d", METADATA_NAME_PREFIX, numMetadataSelects + 1); cartRemove(cart, buf); safef(buf, sizeof(buf), "%s%d", METADATA_VALUE_PREFIX, numMetadataSelects + 1); cartRemove(cart, buf); } } else { // create defaults numMetadataSelects = 2; metadataName = needMem(sizeof(char *) * numMetadataSelects); metadataValue = needMem(sizeof(char *) * numMetadataSelects); metadataName[0] = "cell"; metadataName[1] = "antibody"; metadataValue[0] = ANYLABEL; metadataValue[1] = ANYLABEL; } if(metaDbExists) { int i; char **metaValues = NULL; int count = metaDbVars(conn, &metaValues); for(i = 0; i < numMetadataSelects; i++) { char **terms; char buf[256]; int len; hPrintf("<tr><td>\n"); if(numMetadataSelects > 2 || i >= 2) { safef(buf, sizeof(buf), "return delSearchSelect(this, %d);", i + 1); hButtonWithOnClick(searchTracks, "-", "delete this row", buf); } else hPrintf(" "); hPrintf("</td><td>\n"); safef(buf, sizeof(buf), "return addSearchSelect(this, %d);", i + 1); hButtonWithOnClick(searchTracks, "+", "add another row after this row", buf); hPrintf("</td><td>and</td>\n"); hPrintf("</td><td colspan=2 nowrap>\n"); safef(buf, sizeof(buf), "%s%i", METADATA_NAME_PREFIX, i + 1); cgiMakeDropListClassWithStyleAndJavascript(buf, metaValues, count, metadataName[i], NULL, NULL, "onchange=metadataSelectChanged(this)"); hPrintf("is</td>\n<td>\n"); len = getTermArray(conn, &terms, metadataName[i]); safef(buf, sizeof(buf), "%s%i", METADATA_VALUE_PREFIX, i + 1); cgiMakeDropListFull(buf, terms, terms, len, metadataValue[i], NULL); hPrintf("</td></tr>\n"); } } hPrintf("</table>\n"); hPrintf("<input type='submit' name='%s' id='searchSubmit' value='Search' style='font-size:14px;'>\n", searchTracks); hPrintf("<input type='submit' name='submit' value='Cancel' style='font-size:14px;'>\n"); hPrintf("</div>\n</div>\n"); hPrintf("</form>\n"); if(descSearch != NULL && !strlen(descSearch)) descSearch = NULL; if(groupSearch != NULL && sameString(groupSearch, ANYLABEL)) groupSearch = NULL; if(!isEmpty(descSearch)) { char *tmp = cloneString(descSearch); char *val = nextWord(&tmp); struct slName *el, *descList = NULL; int i; while (val != NULL) { slNameAddTail(&descList, val); val = nextWord(&tmp); } descWordCount = slCount(descList); descWords = needMem(sizeof(char *) * descWordCount); for(i = 0, el = descList; el != NULL; i++, el = el->next) descWords[i] = strLower(el->name); } if(doSearch) { if(simpleSearch) { struct trixSearchResult *tsList; struct hash *trackHash = newHash(0); // Create a hash of tracks, so we can map the track name into a track struct. for (group = groupList; group != NULL; group = group->next) { struct trackRef *tr; for (tr = group->trackList; tr != NULL; tr = tr->next) { struct track *track = tr->track; hashAdd(trackHash, track->track, track); struct track *subTrack = track->subtracks; for (subTrack = track->subtracks; subTrack != NULL; subTrack = subTrack->next) hashAdd(trackHash, subTrack->track, subTrack); } } for(tsList = trixSearch(trix, descWordCount, descWords, TRUE); tsList != NULL; tsList = tsList->next) { struct track *track = (struct track *) hashFindVal(trackHash, tsList->itemId); refAdd(&tracks, track); tracksFound++; } slReverse(&tracks); } else if(!isEmpty(nameSearch) || descSearch != NULL || groupSearch != NULL || numMetadataNonEmpty) { // First do the metaDb searches, which can be done quickly for all tracks with db queries. struct hash *matchingTracks = newHash(0); struct hash *trackMetadata = newHash(0); struct slName *el, *metaTracks = NULL; int i; for(i = 0; i < numMetadataSelects; i++) { if(!isEmpty(metadataValue[i])) { struct slName *tmp = metaDbSearch(conn, metadataName[i], metadataValue[i], "is"); if(metaTracks == NULL) metaTracks = tmp; else metaTracks = slNameIntersection(metaTracks, tmp); } } for (el = metaTracks; el != NULL; el = el->next) hashAddInt(matchingTracks, el->name, 1); if(metaDbExists && !isEmpty(descSearch)) { // Load all metadata words for each track to facilitate metadata search. char query[256]; struct sqlResult *sr = NULL; char **row; safef(query, sizeof(query), "select obj, val from metaDb"); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { char *str = cloneString(row[1]); hashAdd(trackMetadata, row[0], str); } sqlFreeResult(&sr); } for (group = groupList; group != NULL; group = group->next) { if(groupSearch == NULL || sameString(group->name, groupSearch)) { if (group->trackList != NULL) { struct trackRef *tr; for (tr = group->trackList; tr != NULL; tr = tr->next) { struct track *track = tr->track; if((isEmpty(nameSearch) || isNameMatch(track, nameSearch, "contains")) && (isEmpty(descSearch) || isDescriptionMatch(track, descWords, descWordCount)) && (!numMetadataNonEmpty || hashLookup(matchingTracks, track->track) != NULL)) { tracksFound++; refAdd(&tracks, track); } if (track->subtracks != NULL) { struct track *subTrack; for (subTrack = track->subtracks; subTrack != NULL; subTrack = subTrack->next) { if((isEmpty(nameSearch) || isNameMatch(subTrack, nameSearch, "contains")) && (isEmpty(descSearch) || isDescriptionMatch(subTrack, descWords, descWordCount)) && (!numMetadataNonEmpty || hashLookup(matchingTracks, subTrack->track) != NULL)) { // XXXX to parent hash. - use tdb->parent instead. hashAdd(parents, subTrack->track, track); tracksFound++; refAdd(&tracks, subTrack); } } } } } } } slSort(&tracks, gCmpTrack); } } if(tracksFound < 1) { if(doSearch) hPrintf("<p>No tracks found</p>\n"); } else { struct hash *tdbHash = makeTrackHash(database, chromName); hPrintf("<form action='%s' name='SearchTracks' id='searchResultsForm' method='post'>\n\n", hgTracksName()); #define MAX_FOUND_TRACKS 100 if(tracksFound > MAX_FOUND_TRACKS) { hPrintf("<table class='redBox'><tr><td>Found %d tracks, but only the first %d are displayed.",tracksFound,MAX_FOUND_TRACKS); hPrintf("<BR><B><I>Please narrow search criteria to find fewer tracks.</I></B></div></td></tr></table>\n"); } #define ENOUGH_FOUND_TRACKS 10 if(tracksFound >= ENOUGH_FOUND_TRACKS) { hPrintf("<INPUT TYPE=SUBMIT NAME='submit' VALUE='View in Browser' class='viewBtn'>"); hPrintf(" <FONT class='selCbCount'></font>"); } // Set up json for js functionality struct dyString *trackDbJson = newDyString(1000); int trackDbJsonCount = 1; dyStringPrintf(trackDbJson, "<script>var trackDbJson = {\nruler: {shortLabel: 'ruler', longLabel: 'Base Position Controls', canPack: 0, visibility: %d}", rulerMode); hPrintf("<table><tr><td colspan='2'>\n"); hPrintf("</td><td align='right'>\n"); #define PM_BUTTON "<IMG height=18 width=18 onclick=\"return findTracksCheckAllWithWait(%s);\" id='btn_%s' src='../images/%s' title='%s all found tracks'>" hPrintf("</td></tr><tr bgcolor='#%s'><td>",HG_COL_HEADER); printf(PM_BUTTON,"true", "plus_all", "add_sm.gif", "Select"); printf(PM_BUTTON,"false","minus_all","remove_sm.gif","Unselect"); hPrintf("</td><td><b>Visibility</b></td><td colspan=2> <b>Track Name</b></td></tr>\n"); // FIXME: I believe that only data tracks should appear in found tracks. If composite is found, show its children instead int trackCount=0; struct slRef *ptr; while((ptr = slPopHead(&tracks))) { if(++trackCount > MAX_FOUND_TRACKS) break; struct track *track = (struct track *) ptr->val; trackJson(trackDbJson, track, trackDbJsonCount++); // trackDbOutput(track->tdb, stderr, ',', '\n'); hPrintf("<tr bgcolor='%s' valign='top' class='found%s%s'>\n",COLOR_BG_ALTDEFAULT, (tdbIsCompositeChild(track->tdb)?" subtrack":""), (track->canPack?" canPack":"")); // NOTE: We have now changed the paradigm for subtrack vis: // There must be a {trackName}_sel to have subtrack level vis override. // This means rightClick must make a {trackName}_sel, which is needed for hgTrackUi conformity anyway // AND hgTracks.c now relies upon "_sel" even with subtrack-level vis. // NOTE: Difficulties with "sel" and "vis" controls: // 1) subtracks need both "sel" and "vis", but non-subtracks need only "vis" // 2) Submit of form instead of ajax is nice (because it allows cancelling changes), but do not want to set any vars, unless specifically changed on form // 3) When unchecked, need to delete vars instead of set them // Solution to "sel", "vis" difficulties // 1) findTracks remains a submit but: // 2) 'sel' and 'vis' input are not named (won't be submitted) // 3) hidden disabled and named 'sel' and 'vis' vars exist // 4a) check subtrack: enable hidden 'sel' and 'vis' track, set to 'on' and pack/full // 4b) check non-track: enable hidden 'vis', set to pack/full // 5a) uncheck subtrack: enable hidden 'sel' and 'vis' track, set to '[]' and '[]' // 5b) uncheck non-track: enable hidden 'vis', set to '[]' // 6) Change vis: enable hidden 'vis', set to non-hidden vis hPrintf("<td align='center' valign='center'>\n"); char name[256]; safef(name,sizeof(name),"%s_sel",track->track); boolean checked = FALSE; if(tdbIsCompositeChild(track->tdb)) { checked = fourStateVisible(subtrackFourStateChecked(track->tdb,cart)); // Don't need all 4 states here. Visible=checked&&enabled track->visibility = limitedVisFromComposite(track); struct trackDb *parentTdb = trackDbCompositeParent(track->tdb); if(parentTdb != NULL) track->visibility = tvMin(track->visibility,parentTdb->visibility); checked = (checked && ( track->visibility != tvHide )); // Checked is only if subtrack level vis is also set! // Only subtracks get "_sel" var #define CB_HIDDEN_VAR "<INPUT TYPE=HIDDEN disabled=true NAME='%s_sel' VALUE='%s'>" hPrintf(CB_HIDDEN_VAR,track->track,CART_VAR_EMPTY); } else checked = ( track->visibility != tvHide ); #define CB_SEEN "<INPUT TYPE=CHECKBOX id='%s_sel_id' VALUE='on' class='selCb' onclick='findTracksClickedOne(this,true);'%s>" hPrintf(CB_SEEN,track->track,(checked?" CHECKED":"")); hPrintf("</td><td>\n"); #define VIS_HIDDEN_VAR "<INPUT TYPE=HIDDEN disabled=true NAME='%s' VALUE='%s'>" hPrintf(VIS_HIDDEN_VAR,track->track,CART_VAR_EMPTY); // All tracks get vis hidden var if (tdbIsSuper(track->tdb)) { // FIXME: Replace this with select box WITHOUT NAME but with id // HOWEVER, I haven't seen a single supertrack in found tracks so I think they are excluded and this is dead code warn("superTrack: %s '%s' doesn't work yet.",track->track,track->longLabel); superTrackDropDown(cart, track->tdb, superTrackHasVisibleMembers(track->tdb)); } else { char extra[512]; safef(extra,sizeof(extra),"id='%s_id' onchange='findTracksChangeVis(this)'",track->track); hTvDropDownClassWithJavascript(NULL, track->visibility,track->canPack,"normalText seenVis",extra); } hPrintf("</td>\n"); //if(tdbIsSuper(track->tdb) || tdbIsComposite(track->tdb)) // hPrintf("<td><a target='_top' href='%s' title='Configure track...'>%s</a></td>\n", trackUrl(track->track, NULL), track->shortLabel); //else hPrintf("<td><a target='_top' onclick=\"hgTrackUiPopUp('%s',true); return false;\" href='%s' title='Display track details'>%s</a></td>\n", track->track, trackUrl(track->track, NULL), track->shortLabel); hPrintf("<td>%s", track->longLabel); compositeMetadataToggle(database, track->tdb, "...", TRUE, FALSE, tdbHash); hPrintf("</td></tr>\n"); } hPrintf("</table>\n"); hPrintf("<INPUT TYPE=SUBMIT NAME='submit' VALUE='View in Browser' class='viewBtn'>"); hPrintf(" <FONT class='selCbCount'></font>"); - hPrintf("<script type='text/javascript'>findTracksNormalizeFound();</script>\n"); hPrintf("\n</form>\n"); // be done with json dyStringAppend(trackDbJson, "}\n</script>\n"); hPrintf(dyStringCannibalize(&trackDbJson)); } hPrintf("<p><b>Recently Done</b><ul>\n" "<li>Deleting/Adding selection criteria with [-][+] buttons in 'Advanced Search'.</li>" "<li>Found track list shows only the first 100 tracks with warning to narrow search.\"</li>\n" "<li>Clicks in menu bar up top now work correctly.</li>\n" "<li>Found tracks are selected by checkboxes.</li>" "<li>Checkbox state should be persistent. Subtracks selected will be checked in their composite.</li>" "<li>Full descriptions of metadata items are indexed in simple search index (e.g. cell descriptions).</li>" "</ul></p>" "<p><b>Known Problems</b><ul>" "<li>Search results should be cleared when switching between simple and advanced tabs (do we agree on that?)</li>" "<li>Subtracks often come up with the wrong visibility (but saving visibility for subtracks does work)." "<BR>QUESTION: Upon selecting with checkbox, what is correct default vis for any track? Perhaps 'full' for wigs, 'pack' for others?</li>" "<li>Too large of found track list results in slow scripts.</li>" "<li>Strangeness seen in finding tracks: 'ENCODE' in description combined with antibody selection results in no tracks found." "<BR>QUESTION: Is that a bug? REM that description search is NOT inherited. (* Suggestions below.)</li>" "</ul></p>" "<p><b>Suggested improvments:</b><ul>\n" "<li>Only data tracks should be seen in found track list. Found superTracks/composites should be converted into their children.</li>" "<li>Configuring found tracks should be by pop-up dialog box.</li>" "<li>Look and feel of found track list (here) and composite subtrack list (hgTrackUi) should converge.</li>" "<li>Drop-down list of terms (cells, antibodies, etc.) should be multi-select with checkBoxes as seen in filterComposites.</li>" "<li>* 'Descrtiption' and 'Track Name' should be merged into a single search term.</li>" "<li>* 'Descrtiption' should be inherited by subtracks?</li>" "</ul></p>\n"); webEndSectionTables(); }