File Changes for aamp

v240_preview to v240_base (2010-09-07 to 2010-09-14) v240

• src/hg/makeDb/trackDb/human/agilentCgh.html
  • lines changed 150, context: html, text, full: html, text
    trackDbs were split into different stanzas for release status, but they had different parent track names. Now they are the same, and the subTracks are referencing the correct parent name as well. Renamed old HTML description to match.
  • lines changed 19, context: html, text, full: html, text
    got rid of the two CNV arrays from the public/beta description
• src/hg/makeDb/trackDb/human/agilentCgh.notPublic.html
  • lines changed 123, context: html, text, full: html, text
    hg18 tracks were bed 6 and hg19 are bed 4. Unlike the rat and mouse tracks, they are all the same type in each assembly at least, so the noInherit-on stuff is not necessary. For the beta/public track, it's bed 6. this is quite complicated.
• src/hg/makeDb/trackDb/human/agilentCghAlpha.html
  • lines changed 123, context: html, text, full: html, text
    hg18 tracks were bed 6 and hg19 are bed 4. Unlike the rat and mouse tracks, they are all the same type in each assembly at least, so the noInherit-on stuff is not necessary. For the beta/public track, it's bed 6. this is quite complicated.
• src/hg/makeDb/trackDb/human/agilentProbes.html
  • lines changed 150, context: html, text, full: html, text
    trackDbs were split into different stanzas for release status, but they had different parent track names. Now they are the same, and the subTracks are referencing the correct parent name as well. Renamed old HTML description to match.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    hg18 tracks were bed 6 and hg19 are bed 4. Unlike the rat and mouse tracks, they are all the same type in each assembly at least, so the noInherit-on stuff is not necessary. For the beta/public track, it's bed 6. this is quite complicated.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 17, context: html, text, full: html, text
    trackDbs were split into different stanzas for release status, but they had different parent track names. Now they are the same, and the subTracks are referencing the correct parent name as well. Renamed old HTML description to match.
  • lines changed 6, context: html, text, full: html, text
    hg18 tracks were bed 6 and hg19 are bed 4. Unlike the rat and mouse tracks, they are all the same type in each assembly at least, so the noInherit-on stuff is not necessary. For the beta/public track, it's bed 6. this is quite complicated.
• src/hg/makeDb/trackDb/mouse/agilentCgh.notPublic.html
  • lines changed 90, context: html, text, full: html, text
    changed name of the alpha version of the html
• src/hg/makeDb/trackDb/mouse/agilentCghAlpha.html
  • lines changed 90, context: html, text, full: html, text
    changed name of the alpha version of the html
• src/hg/makeDb/trackDb/mouse/agilentCghBeta.html
  • lines changed 57, context: html, text, full: html, text
    Removed a track from beta and separated out public, which still has the track.
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    changed name of the alpha version of the html
  • lines changed 25, context: html, text, full: html, text
    New tables were bed 4 instead of bed 6, so the noInherit-on composite track needed to be on
  • lines changed 41, context: html, text, full: html, text
    Removed a track from beta and separated out public, which still has the track.
• src/hg/makeDb/trackDb/rat/agilentCgh.notPublic.html
  • lines changed 90, context: html, text, full: html, text
    New tables were bed 4 instead of bed 6, so the noInherit-on composite track needed to be on
• src/hg/makeDb/trackDb/rat/agilentCghAlpha.html
  • lines changed 90, context: html, text, full: html, text
    New tables were bed 4 instead of bed 6, so the noInherit-on composite track needed to be on
• src/hg/makeDb/trackDb/rat/trackDb.ra
  • lines changed 25, context: html, text, full: html, text
    New tables were bed 4 instead of bed 6, so the noInherit-on composite track needed to be on