File Changes for markd

v240_preview to v240_base (2010-09-07 to 2010-09-14) v240

• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    fix incorrect use of printf detect by gcc 4.4.3
• src/hg/mouseStuff/bedCoverage/bedCoverage.c
  • lines changed 2, context: html, text, full: html, text
    fixed C99 incompatiblities
• src/hg/mouseStuff/mafCoverage/mafCoverage.c
  • lines changed 2, context: html, text, full: html, text
    fixed C99 incompatiblities
• src/hg/utils/gtfToGenePred/gtfToGenePred.c
  • lines changed 188, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/makefile
  • lines changed 21, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/basic.gp
  • lines changed 4, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/basic.info
  • lines changed 5, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/dups.gp
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/dups.out
  • lines changed 3, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/ensembl.gp
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/ensembl.info
  • lines changed 3, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/geneNameAsName2.gp
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/impliedStop.gp
  • lines changed 6, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/impliedStop.info
  • lines changed 7, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/splitStop.gp
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/srcPre.gp
  • lines changed 3, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/expected/srcPre.info
  • lines changed 4, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/input/basic.gtf
  • lines changed 14, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/input/dups.gtf
  • lines changed 19, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/input/ensembl.gtf
  • lines changed 12, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/input/flybase.gtf
  • lines changed 56, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/input/split.gtf
  • lines changed 5, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/input/splitStop.gtf
  • lines changed 34, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/gtfToGenePred/tests/makefile
  • lines changed 56, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
  • lines changed 1, context: html, text, full: html, text
    fixed make error caused by directory move
• src/hg/utils/makefile
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/hg/utils/refSeqGet/refSeqVerInfo.c
  • lines changed 4, context: html, text, full: html, text
    fixed C99 incompatiblities
• src/lib/pipeline.c
  • lines changed 4, context: html, text, full: html, text
    hack around some systems complaining about read result not being used even with cast
• src/makefile
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/gtfToGenePred.c
  • lines changed 188, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/makefile
  • lines changed 21, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/basic.gp
  • lines changed 4, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/basic.info
  • lines changed 5, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/dups.gp
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/dups.out
  • lines changed 3, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/ensembl.gp
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/ensembl.info
  • lines changed 3, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/geneNameAsName2.gp
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/impliedStop.gp
  • lines changed 6, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/impliedStop.info
  • lines changed 7, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/splitStop.gp
  • lines changed 2, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/srcPre.gp
  • lines changed 3, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/expected/srcPre.info
  • lines changed 4, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/input/basic.gtf
  • lines changed 14, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/input/dups.gtf
  • lines changed 19, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/input/ensembl.gtf
  • lines changed 12, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/input/flybase.gtf
  • lines changed 56, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/input/split.gtf
  • lines changed 5, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/input/splitStop.gtf
  • lines changed 34, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/gtfToGenePred/tests/makefile
  • lines changed 56, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql
• src/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    move gtfToGenePred to hg/utils so that it doesn't cause grief for people trying to compile without mysql