File Changes for tdreszer

v240_preview to v240_base (2010-09-07 to 2010-09-14) v240

• src/hg/cartDump/cartDump.c
  • lines changed 13, context: html, text, full: html, text
    hgTrackUi can now use ajax to update composite/view settings, which enables keeping subtrack level v. composite/view level settings properly influencing each other. That is, timing is important in ensuring that composite/view level changes overrides subtrack level settings. The triggers for this code in hui.c are all ifdef'd on SUBTRACK_CFG_POPUP.
• src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl
  • lines changed 1, context: html, text, full: html, text
    Fix a typo found by Jim
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 14, context: html, text, full: html, text
    Added tdbLimitedByAncestry() and used it to fix 2 vis problems: cfg popup and findTracks initial vis
• src/hg/hgTracks/bamTrack.c
  • lines changed 1, context: html, text, full: html, text
    Support conditional center labels for dense subtracks in both C and JS. Top dense subtrack in a set will show centerLabel of composite.
• src/hg/hgTracks/config.c
  • lines changed 18, context: html, text, full: html, text
    Cleaned up a lot of obsolete ifdefs, now that dragReorder and flatTracks are on the RR
• src/hg/hgTracks/expRatioTracks.c
  • lines changed 1, context: html, text, full: html, text
    Support conditional center labels for dense subtracks in both C and JS. Top dense subtrack in a set will show centerLabel of composite.
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    Put blueBar on a diet. Really we need css and bluBar as lib function.
  • lines changed 1, context: html, text, full: html, text
    blue lines were off on bg image
  • lines changed 176, context: html, text, full: html, text
    Cleaned up a lot of obsolete ifdefs, now that dragReorder and flatTracks are on the RR
  • lines changed 29, context: html, text, full: html, text
    Support conditional center labels for dense subtracks in both C and JS. Top dense subtrack in a set will show centerLabel of composite.
  • lines changed 2, context: html, text, full: html, text
    Right click view image must use regen a non-imageV2 image, due to conditional centerLabels in imageV2, among other things.
• src/hg/hgTracks/hgTracks.h
  • lines changed 9, context: html, text, full: html, text
    Cleaned up a lot of obsolete ifdefs, now that dragReorder and flatTracks are on the RR
  • lines changed 12, context: html, text, full: html, text
    Support conditional center labels for dense subtracks in both C and JS. Top dense subtrack in a set will show centerLabel of composite.
• src/hg/hgTracks/imageV2.c
  • lines changed 26, context: html, text, full: html, text
    Cleaned up a lot of obsolete ifdefs, now that dragReorder and flatTracks are on the RR
  • lines changed 2, context: html, text, full: html, text
    Subtrack wigs can be packed.
  • lines changed 3, context: html, text, full: html, text
    Further sorting out the difference between canPack and shouldPack
  • lines changed 88, context: html, text, full: html, text
    Support conditional center labels for dense subtracks in both C and JS. Top dense subtrack in a set will show centerLabel of composite.
• src/hg/hgTracks/imageV2.h
  • lines changed 83, context: html, text, full: html, text
    Cleaned up a lot of obsolete ifdefs, now that dragReorder and flatTracks are on the RR
  • lines changed 19, context: html, text, full: html, text
    Support conditional center labels for dense subtracks in both C and JS. Top dense subtrack in a set will show centerLabel of composite.
• src/hg/hgTracks/mainMain.c
  • lines changed 1, context: html, text, full: html, text
    Right click view image must use regen a non-imageV2 image, due to conditional centerLabels in imageV2, among other things.
• src/hg/hgTracks/searchTracks.c
  • lines changed 14, context: html, text, full: html, text
    Added tdbLimitedByAncestry() and used it to fix 2 vis problems: cfg popup and findTracks initial vis
  • lines changed 24, context: html, text, full: html, text
    Further sorting out the difference between canPack and shouldPack
  • lines changed 15, context: html, text, full: html, text
    Extended white list of mdb vars and changed some labelling.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 5, context: html, text, full: html, text
    Cleaned up a lot of obsolete ifdefs, now that dragReorder and flatTracks are on the RR
  • lines changed 14, context: html, text, full: html, text
    Support conditional center labels for dense subtracks in both C and JS. Top dense subtrack in a set will show centerLabel of composite.
  • lines changed 2, context: html, text, full: html, text
    Fixed bug where found and selected tracks were not displayed in browser because the '_sel' setting was being removed as redundant.
• src/hg/hgTracks/wigTrack.c
  • lines changed 3, context: html, text, full: html, text
    Cleaned up a lot of obsolete ifdefs, now that dragReorder and flatTracks are on the RR
• src/hg/inc/hui.h
  • lines changed 3, context: html, text, full: html, text
    Added tdbLimitedByAncestry() and used it to fix 2 vis problems: cfg popup and findTracks initial vis
• src/hg/js/ajax.js
  • lines changed 103, context: html, text, full: html, text
    Tangled code that allows form submits to wait for outstanding ajax completion.
  • lines changed 3, context: html, text, full: html, text
    Added support for setCartVars to trigger compositeTdbCleanupOverrides... that is ajax can now trigger the handling of subtrack v. composite/view setting overrides
• src/hg/js/hgTracks.js
  • lines changed 2, context: html, text, full: html, text
    Added tdbLimitedByAncestry() and used it to fix 2 vis problems: cfg popup and findTracks initial vis
  • lines changed 8, context: html, text, full: html, text
    Further sorting out the difference between canPack and shouldPack
  • lines changed 48, context: html, text, full: html, text
    Support conditional center labels for dense subtracks in both C and JS. Top dense subtrack in a set will show centerLabel of composite.
  • lines changed 7, context: html, text, full: html, text
    Right click view image must use regen a non-imageV2 image, due to conditional centerLabels in imageV2, among other things.
  • lines changed 33, context: html, text, full: html, text
    Fixed bug where found and selected tracks were not displayed in browser because the '_sel' setting was being removed as redundant.
• src/hg/js/hui.js
  • lines changed 21, context: html, text, full: html, text
    hgTrackUi can now use ajax to update composite/view settings, which enables keeping subtrack level v. composite/view level settings properly influencing each other. That is, timing is important in ensuring that composite/view level changes overrides subtrack level settings. The triggers for this code in hui.c are all ifdef'd on SUBTRACK_CFG_POPUP.
  • lines changed 1, context: html, text, full: html, text
    Removed 'FIXME' which has been fixed.
• src/hg/js/utils.js
  • lines changed 18, context: html, text, full: html, text
    Added support for setCartVars to trigger compositeTdbCleanupOverrides... that is ajax can now trigger the handling of subtrack v. composite/view setting overrides
• src/hg/lib/cart.c
  • lines changed 61, context: html, text, full: html, text
    hgTrackUi can now use ajax to update composite/view settings, which enables keeping subtrack level v. composite/view level settings properly influencing each other. That is, timing is important in ensuring that composite/view level changes overrides subtrack level settings. The triggers for this code in hui.c are all ifdef'd on SUBTRACK_CFG_POPUP.
• src/hg/lib/hui.c
  • lines changed 98, context: html, text, full: html, text
    hgTrackUi can now use ajax to update composite/view settings, which enables keeping subtrack level v. composite/view level settings properly influencing each other. That is, timing is important in ensuring that composite/view level changes overrides subtrack level settings. The triggers for this code in hui.c are all ifdef'd on SUBTRACK_CFG_POPUP.
  • lines changed 6, context: html, text, full: html, text
    Removed a TODO list which has been done.
  • lines changed 22, context: html, text, full: html, text
    Added tdbLimitedByAncestry() and used it to fix 2 vis problems: cfg popup and findTracks initial vis
• src/hg/makeDb/trackDb/README
  • lines changed 1, context: html, text, full: html, text
    Added priority default is 100