Commits for vsmalladi

v240_preview to v240_base (2010-09-07 to 2010-09-14) v240

• Updated Tier information for H1-hESC and NHEK cell lines. Upgraded H1-hESC to tier 1 and downgraded NHEK to tier 3
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 1, context: html, text, full: html, text
• Updated validation document nameing, so that links to documents would work. Also sperated two antibodies for target YY1
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 34, context: html, text, full: html, text
• Added 4 new antibody validation document refrences and 3 new antibodies (BCLAF1(M33-P5B11), ATF3, GATA-2(CG2-96) and LEF-1(C-19)) for the Myers lab.
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 49, context: html, text, full: html, text
• Updated registration term names for GATA2_(CG2-96) and LEF1_(C-19) to be consistent with ncbi naming of the genes. Also updated antibody document link to specify Myers lab for ATF3 antibody
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 7, context: html, text, full: html, text
• Shortened tag for BoneMarrow to BMarrow to fit table name of 64 characters.
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 1, context: html, text, full: html, text