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UCSC Genome Browser Project Staff:
-
Jim Kent: Research Scientist,
- co-director of UCSC Genome Browser project.
+ co-PI and architect of UCSC Genome Browser and
+ ENCODE DCC projects.
Design and implementation of the
Genome Browser and the
BLAT
sequence search tool. Author of the
the UCSC Known Genes annotations,
+ TARGET=_blank>UCSC Genes annotations,
the Gene Sorter,
VisiGene,
Genome Graphs, chaining
- and netting programs, the In
- Silico PCR tool, and the
+ and netting programs,
+ bigWig and bigBed formats, the
+ In Silico PCR tool, and the
GigAssembler.
- Implementation of many Genome Browser annotation tracks,
- including FPC contigs, assembly, gap, coverage,
- known genes, full mRNA, spliced ESTs, human ESTs,
- Genscan genes, non-human mRNA and EST, and mouse BLAT.
-
Galt Barber:
- Genome Browser engineering. VisiGene, Genome Graphs,
- parasol, ENCODE submission pipeline.
+ Genome Browser and ENCODE DCC engineering.
-
Hiram Clawson:
- Genome Browser engineering. New and updated organism
- browsers, wiggle tracks, genomeWiki, wikiTrack,
+ Genome Browser engineering. Wiki support,
mirror and licensing technical support, modENCODE.
-
Melissa Cline:
- Genome Browser engineering. ENCODE.
-
-
- Antonio Coelho:
- Genome Browser QA, mailing list support.
+ ENCODE DCC and Genome Browser engineering.
-
Mark Diekhans:
- Technical engineering lead and PhD student. MGC project
- CCDS, Genome Browser GenBank data pipeline, Gencode.
+ Genome Browser technical engineering lead. Gencode,
+ CCDS, MGC projects. Genome Browser GenBank data
+ pipeline. PhD student.
-
Tim Dreszer:
- Genome Browser engineering. ENCODE, guinea pig browser.
+ ENCODE DCC and Genome Browser engineering.
-
Pauline Fujita:
Genome Browser QA, mailing list support.
-
Mary Goldman:
Genome Browser QA, mailing list support.
-
Rachel Harte:
- Genome Browser engineering. CCDS and MGC curation,
- Zebrafish browser.
+ Gencode, CCDS, MGC curation. Genome Browser engineering.
-
Angie Hinrichs:
- Genome Browser engineering. SNPs and variation data,
- insect, chicken and dog browsers, modENCODE, Table
- Browser, session management.
+ Genome Browser engineering, SNPs and variation data,
+ modENCODE.
-
Fan Hsu:
Director of Proteomics. Cancer browser projects, GSID,
- Proteome Browser, Known Genes.
+ Proteome Browser.
-
Donna Karolchik:
- Genome Browser project and engineering management,
- documentation, web content, Genome Browser licensing,
- training/outreach coordinator.
+ Genome Browser program and engineering management,
+ documentation, web content, Genome Browser licensing.
-
Robert Kuhn:
- Genome Browser QA manager, project outreach, mailing
- list support.
+ Genome Browser associate director, QA manager,
+ training and outreach.
-
Katrina Learned:
- Genome Browser QA, mailing list support.
+ ENCODE DCC QA lead, Genome Browser QA, mailing list
+ support.
-
Chin Li:
- Genome Browser engineering. New and updated organism
- browsers.
+ Genome Browser engineering.
-
Venkat Malladi:
- ENCODE data wrangler.
+ ENCODE DCC biological data technician.
-
Larry Meyer:
- Genome Browser engineering. ENCODE, UI, horse browser.
+ Genome Browser and ENCODE DCC engineering.
-
Thomas Pringle:
- Technical advisor on Proteome Browser
- project, avid Genome Browser user, constant source of ideas
- for improving and expanding project functionality.
+ Genome Browser technical advisor and power user.
-
Brian Raney:
- Genome Browser engineering. ENCODE, zebra finch browser.
+ Genome Browser and ENCODE DCC engineering.
-
Brooke Rhead:
- Genome Browser QA, mailing list support.
+ Genome Browser QA lead, mailing list support.
-
Kate Rosenbloom:
- ENCODE DCC technical project manager and Genome Browser
- engineering. ENCODE DCC and pilot projects, multiz
- and conservation alignments, custom track manager.
+ ENCODE DCC technical project manager. Genome Browser
+ engineering.
-
Cricket Alicia Sloan:
- ENCODE data wrangler.
+ ENCODE DCC biological data technician.
-
Vanessa Swing:
- Genome Browser QA, mailing list support.
+ ENCODE DCC and Genome Browser QA, mailing list support.
-
Ann Zweig:
- Genome Browser QA Team Lead, mailing list support.
+ Genome Browser project manager, mailing list manager.
Post-docs and Graduate Students (Browser-related support):
-
- Robert Baertsch:
- Graduate student - Synteny, pseudogenes, orthology;
- Genome Browser support.
-
-
Steve Benz:
Graduate student - Cancer genomics browser.
-
Craig Lowe:
Graduate student - Contribution of transposons to the
evolution of the human genome.
-
Benedict Paten:
Graduate student - ENCODE DAC, comparative genomics and
evolutionary analysis.
-
Krishna Roskin:
Graduate student - Phylogenetic analysis, Genome
Browser database support, early Table Browser support.
-
Zack Sanborn:
Graduate student - Cancer genomics browser.
-
Bernard Suh:
Graduate student - Reconstruction of evolutionary
- trees.
+ trees, ENCODE DCC.
-
Jing Zhu:
- Post-doctoral scholar - Cancer genomics browser.
+ Cancer genomics browser project manager.
Systems Administration Staff:
Center for Biomolecular Science and Engineering
(CBSE) Staff:
- We gratefully acknowledge the help of former UCSC genome
- team members Gill Bejerano, Mathieu Blanchette, Trevor
+ We gratefully acknowledge the help of project alumni
+ Robert Baertsch, Gill Bejerano, Mathieu Blanchette, Trevor
Bruen, Brenna Candelaria, Mike Chalup, Chad
- Chen, Ron Chao, Vege Clerisse, Jenny Draper,
+ Chen, Ron Chao, Vege Clerisse, Antonio Coelho, Jenny Draper,
Phoenix Eagleshadow, Terry Furey, Patrick Gavin,
Jennifer Jackson, Scot Kennedy, Andy Kern, Nick Littlestone,
Yontao Lu, Crystal Lynch, Jian Ma, Chester Manuel, Jakob
Pedersen,
Mike Pheasant, Andy Pohl, Katie Pollard, Ruth Rabinowitz,
Sanja Rogic, Matt Schwartz, Kayla Smith, Chuck Sugnet,
Ali Sultan-Qurraie, Adam Siepel, Paul Tatarksy,
Archana Thakkapallayil, Daryl Thomas, Aaron Tomb,
- Heather Trumbower, Sandra Walton, Ting Wang,
- Ryan Weber, Wei Wu, Matt Xia, Chen-Hsiang Yeang, and Degui
- Zhi.
+ Heather Trumbower, Sandra Walton, Susan Rose, Ting Wang,
+ Ryan Weber, Alexander Wolfe, Wei Wu, Matt Xia, Chen-Hsiang
+ Yeang, and Degui Zhi.
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