Commits for vsmalladi

v239_base to v240_preview (2010-08-31 to 2010-09-07) v240

• Updated Antibody validation document naming and links.
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 18, context: html, text, full: html, text
• Updated Encode tracDb names to be only the composite name.ra instead of including prefix trackDb
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeHaibRrbs.ra - lines changed 574, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeHaibTfbs.ra - lines changed 2596, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSydhHistone.ra - lines changed 301, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSydhTfbs.ra - lines changed 764, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRrbs.ra - lines changed 574, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 2596, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 301, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 764, context: html, text, full: html, text
• Removed reference to rank, No rank in metaData only replicate information. Changed rank to replicate.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 1011, context: html, text, full: html, text
• Removed duplcate UwHistone track. Update metaData for UW to remove rank, as this is duplicated information as replicate
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 554, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwChIPSeq.ra - lines changed 2613, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 795, context: html, text, full: html, text
• Updated the track configuration to display replicate information, which was forgotten last time
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 337, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 3, context: html, text, full: html, text
• Updated typo's when trying to display replicate
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 2, context: html, text, full: html, text
• Updated the naming schema for trackDb for Encode tracks to not include prefix trackDb for composites
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncodeSydhHist.ra - lines changed 145, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncodeSydhTfbs.ra - lines changed 571, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncodeUwDnase.ra - lines changed 1018, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 145, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 571, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra - lines changed 1018, context: html, text, full: html, text
• Removed the term rank and used replicate
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra - lines changed 1, context: html, text, full: html, text
• Updated the trackDb names used in the include statment for Encode tracks
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
• Added 6 new submissions for SYDH TFBS track
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 801, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 122, context: html, text, full: html, text
• Misspelled Replicate
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 1, context: html, text, full: html, text
• Fixed cv.ra with tag's with no term and a ? in front of term
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 2, context: html, text, full: html, text
• Fixed typo's in ra structure and variable names
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 18, context: html, text, full: html, text
• Added Antibody for NF-E2, using different term and tag name. Utilizing targert as well.
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 14, context: html, text, full: html, text
• Added Genome Analyzer II, which is the precursor to IIe and IIx.
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 6, context: html, text, full: html, text