File Changes for cricket

v241_preview to v241_base (2010-09-21 to 2010-09-28) v241

• src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/cshlShortRnaSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/dukeDnaseSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/dukeExonArray.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/licrMm9Histone.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/licrMm9Tfbs.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/psuMm9DnaseSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/psuMm9Histone.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/psuMm9RnaSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/psuMm9Tfbs.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/rikenCageSolexa.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/stanfordChipSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/stanfordHg19Hist.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/stanfordHg19HistInput.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/stanfordHg19Tfbs.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/stanfordHg19TfbsInput.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/stanfordMm9Hist.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/stanfordMm9Tfbs.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/stanfordMm9TfbsInput.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/ucDHg19Hist.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/uncFaireSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/utAustinChipSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/DAFs/2.0/uwExonArray.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
  • lines changed 6, context: html, text, full: html, text
    corrected DAF to have the ddf file and the right composite name
• src/hg/encode/DAFs/2.0/uwMm9DnaseSeq.daf
  • lines changed 1, context: html, text, full: html, text
    making all dataTypes consistant with the CV
• src/hg/encode/encodeValidate/config/cv.ra
  • lines changed 14, context: html, text, full: html, text
    added clusters to dataType
  • lines changed 5, context: html, text, full: html, text
    added treatment AMA50ug9h
  • lines changed 2, context: html, text, full: html, text
    Cluster was a tag not term
  • lines changed 1, context: html, text, full: html, text
    changed treatment for AMA
  • lines changed 2, context: html, text, full: html, text
    Fixed broken links in antibody validation for Melissa
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra
  • lines changed 1076, context: html, text, full: html, text
    Change to have ChipSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
  • lines changed 400, context: html, text, full: html, text
    FAIRE-seq to FaireSeq and CHiP-seq to ChipSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 25, context: html, text, full: html, text
    LongRnaSeq to RnaSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    ShortRnaSeq to RnaSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 145, context: html, text, full: html, text
    FAIRE-seq to FaireSeq and CHiP-seq to ChipSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 158, context: html, text, full: html, text
    DNase-seq to DnaseSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
  • lines changed 139, context: html, text, full: html, text
    FAIRE-seq to FaireSeq and CHiP-seq to ChipSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 358, context: html, text, full: html, text
    CAGE to Cage
  • lines changed 2813, context: html, text, full: html, text
    new tracks and metaData added to RikenCage
  • lines changed 441, context: html, text, full: html, text
    Added new tracks to RikenCage
  • lines changed 21, context: html, text, full: html, text
    adding new subtracks
  • lines changed 93, context: html, text, full: html, text
    added two missing exps
  • lines changed 301, context: html, text, full: html, text
    revoked and reloaded subs 1813, 1805, 1799
  • lines changed 336, context: html, text, full: html, text
    updated dateSubmitted and origAssembly
  • lines changed 448, context: html, text, full: html, text
    added fastas and fastqs to metaData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyTiling.ra
  • lines changed 9, context: html, text, full: html, text
    RIP-chip to RipChip
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra
  • lines changed 22, context: html, text, full: html, text
    RIP-chip to RipChip
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 70, context: html, text, full: html, text
    ChIP-seq to ChipSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 623, context: html, text, full: html, text
    ChIP-seq to ChipSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 554, context: html, text, full: html, text
    ChIP-seq to ChipSeq
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    added the new hg19 UW Affy Exon Track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra
  • lines changed 3, context: html, text, full: html, text
    Dafault edits for Katrina
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.html
  • lines changed 119, context: html, text, full: html, text
    fixed the trackDb to have a description and have replicates for all
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra
  • lines changed 1305, context: html, text, full: html, text
    new tracks and metaData added to RikenCage
  • lines changed 243, context: html, text, full: html, text
    Added new tracks to RikenCage
  • lines changed 234, context: html, text, full: html, text
    revoked and reloaded subs 1813, 1805, 1799
  • lines changed 176, context: html, text, full: html, text
    fixed the trackDb to have a description and have replicates for all
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.html
  • lines changed 68, context: html, text, full: html, text
    added the new hg19 UW Affy Exon Track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.ra
  • lines changed 1277, context: html, text, full: html, text
    added the new hg19 UW Affy Exon Track