File Changes for angie

v240_base to v241_preview (2010-09-14 to 2010-09-21) v241

• src/hg/checkTableCoords/tests/makefile
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    Fixing csh syntax that snuck into makefile -- Ubuntu bash complained.
• src/hg/hgTables/great.c
  • lines changed 1, context: html, text, full: html, text
    Fixing warning messages from gcc Ubuntu 4.4.1-4ubuntu9.
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    Fixing warning messages from gcc Ubuntu 4.4.1-4ubuntu9.
• src/hg/hgTracks/searchTracks.c
  • lines changed 1, context: html, text, full: html, text
    Fixing warning messages from gcc Ubuntu 4.4.1-4ubuntu9.
• src/hg/hgc/encodeClick.c
  • lines changed 2, context: html, text, full: html, text
    Fixing warning messages from gcc Ubuntu 4.4.1-4ubuntu9.
• src/hg/hgc/peakClusters.c
  • lines changed 6, context: html, text, full: html, text
    Fixing warning messages from gcc Ubuntu 4.4.1-4ubuntu9.
• src/hg/makeDb/doc/dm2.txt
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    Redmine Track #671 (BDTNP for dm2): Loading up corrected data file emailed from Mark Biggin. Hopefully this completes the track update.
• src/hg/makeDb/doc/dm3.txt
  • lines changed 2, context: html, text, full: html, text
    Redmine Track #671 (BDTNP for dm2): Loading up corrected data file emailed from Mark Biggin. Hopefully this completes the track update.
• src/hg/makeDb/doc/hg18.txt
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    Redmine Track #1079 (1000 Genomes Coverage Masks)
  • lines changed 45, context: html, text, full: html, text
    Redmine Track #1100 (HGDP: correct for strand or fix hgdpGeo.as) / MLQ #1097 (HGDP SNP data). It was actually pretty easy to normalize items to + strand using the SNP reference allele, and remap to snp130 at the same time.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 53, context: html, text, full: html, text
    Redmine Track #1092 (HGDP Allele Freq on hg19): used hg19.snp131 to map hgdpGeo RS IDs, and used script tweak from #1100.
• src/hg/makeDb/trackDb/human/covMask1kGPilotLowCov.html
  • lines changed 71, context: html, text, full: html, text
    Redmine Track #1079 (1000 Genomes Coverage Masks)
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 91, context: html, text, full: html, text
    Redmine Track #1079 (1000 Genomes Coverage Masks)
• src/hg/orthoMap/orthoPickIntron.c
  • lines changed 1, context: html, text, full: html, text
    Fixing warning messages from gcc Ubuntu 4.4.1-4ubuntu9.
• src/hg/protein/pbCalResStdGlobal/pbCalResStdGlobal.c
  • lines changed 8, context: html, text, full: html, text
    Fixing warning messages from gcc Ubuntu 4.4.1-4ubuntu9.
• src/inc/common.mk
  • lines changed 1, context: html, text, full: html, text
    Typo fix: KNETFILE_HOOKS needs an S at the end.
• src/utils/git-reports/git-reports.c
  • lines changed 1, context: html, text, full: html, text
    Fixing warning messages from gcc Ubuntu 4.4.1-4ubuntu9.