49aefc8de09b54f71e1a6bb8141d0ea7df7a417c katrina Tue Sep 14 12:29:18 2010 -0700 Adding drag reorder announcement to news page, minimizing most recent post and removing last post diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 18ea161..a60c8ea 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -26,53 +26,27 @@ <!-- start news --> <P> - <FONT FACE="courier" SIZE="3"><B>20 August 2010 - -New ENCODE Integrated Regulation Super-track Released</B></FONT> - <P> - We are pleased to announce the release of the ENCODE Integrated - Regulation super-track, a collection of regulatory tracks containing - state-of-the-art information about the mechanisms that turn genes on and - off at the transcription level. Individual tracks within the set show - enrichment of histone modifications suggestive of enhancer and promoter - activity, DNAse clusters indicating open chromatin, regions of - transcription factor binding, and transcription levels. When viewed in - combination, the complementary nature of the data within these tracks - has the potential to greatly facilitate our understanding of regulatory - DNA. - </P> - <P> - The data comprising these tracks were generated from hundreds of - experiments on multiple cell lines conducted by labs participating in - the Encyclopedia of DNA Elements (ENCODE) project, and were submitted to - the UCSC ENCODE Data Coordination Center for display on the Genome - Browser. - </P> - <P> - Faced with the problem of how to display such a large amount of data - in a manner facilitating analysis, UCSC has developed new visualization - methods that cluster and overlay the data, and then display the - resulting tracks on a single screen. Each of the cell lines in a track - is associated with a particular color. Light, saturated colors are used - to produce the best transparent overlay. + <FONT FACE="courier" SIZE="3"><B>24 August 2010 - New Drag and Reorder + Functionality Released </B></FONT> + <P> + We are pleased to announce new functionality in the Genome Browser. It is now + possible to rearrange the order that tracks appear in the browser image + directly from the browser image itself. To reorder tracks, click-and-hold the + side label or gray mini-button of a single track and drag the highlighted track to a new + position within the image. </P> <P> - <A HREF="http://tiny.cc/aqtyt"><img style="border: 2px solid black; margin-left:auto; margin-right:auto; display: block;" src="/images/encodeRegShot.gif" - alt="ENCODE Regulatory track screenshot" /> </A> + Because reordering is now available in the browser image itself, we have + removed the "enable track reordering" option from the configuration page. </P> <P> - The data in the ENCODE Regulation super-track, as with all data from the - production phase of the ENCODE project, have genome-wide coverage. In - general, Genome Browser tracks that show ENCODE-generated data can be - identified by the double-helix icon preceding the name in the track - list. Currently, the ENCODE Regulation data are available only on the - March 2006 (NCBI Build 36, UCSC version hg18) assembly of the human - genome. - </P> + Thanks to Tim Dreszer and the rest of the team for implementing and testing this feature. + </P><HR> <P> - For a detailed description of the datasets contained in this super-track - and a discussion of how the tracks can be used synergistically to - examine regions of regulatory functionality within the genome, see the - <A HREF="http://tiny.cc/ntvjk">track description</A> page. + <FONT FACE="courier" SIZE="3"><B>20 August 2010 - +New ENCODE Integrated Regulation Super-track Released:</B></FONT> We are pleased to announce the + release of the ENCODE Integrated Regulation super-track. + <A HREF="goldenPath/newsarch.html#082010">Read more</A>. </P><HR> <P> <FONT FACE="courier" SIZE="3"><B>18 August 2010 - @@ -80,16 +54,6 @@ We have released a Genome Browser for the latest assembly of Cat (<em>Felis catus</em>). <A HREF="goldenPath/newsarch.html#081810">Read more</A>. </P><HR> - <P> - <FONT FACE="courier" SIZE="3"><B>23 July 2010 - BigBed/BigWig Paper Published:</b></FONT> - We are pleased to announce that we have published a paper on - the BigBed and BigWig format. - <A HREF="goldenPath/newsarch.html#072310">Read more</A>. - Kent WJ <em>et al</em>. <A HREF="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btq351" - TARGET=_blank>BigWig and BigBed: enabling browsing of - large distributed data sets.</A> <EM>Bioinformatics</EM>. - 2010 July 17. Published online in advance of print. - </P> </TD><TD WIDTH=15> </TD></TR></TABLE>