Commits for braney

v242_preview to v242_base (2010-10-05 to 2010-10-12) v242

• bam percentages, show bad aligns, check quality length in fastq
  • src/hg/encode/validateFiles/validateFiles.c - lines changed 130, context: html, text, full: html, text
• cactusBed and cactusMaf... helping Benedict and Ngan
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra - lines changed 18, context: html, text, full: html, text
• more stuff, not finished
  • src/hg/encode/metaCollect/metaCollect.c - lines changed 59, context: html, text, full: html, text
• check for fileName's in blocks even if the type is not file
  • src/hg/encode/metaCheck/metaCheck.c - lines changed 3, context: html, text, full: html, text
• build the TRIX index for the track search tool
  • src/hg/makeDb/trackDb/buildTrix - lines changed 46, context: html, text, full: html, text
• add more arguments to specify the metaDb and cv.ra locations
  • src/hg/utils/makeTrackIndex/makeTrackIndex.c - lines changed 14, context: html, text, full: html, text
• some punctuation at r-head's request
  • src/hg/hgc/hgc.c - lines changed 2, context: html, text, full: html, text
• v242 final build
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v242
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text