File Changes for hiram

v242_preview to v242_base (2010-10-05 to 2010-10-12) v242

• src/hg/encode/hgEncodeDataVersions/hgEncodeDataVersions.c
  • lines changed 1, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
• src/hg/hgApi/hgApi.c
  • lines changed 1, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
• src/hg/hgGenome/import.c
  • lines changed 1, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
• src/hg/hgTables/bedList.c
  • lines changed 33, context: html, text, full: html, text
    cache calls to hTrackDbForTrack and hFindTableInfo to fix slow queries on contig-based assemblies
  • lines changed 33, context: html, text, full: html, text
    trying a cache of loadTrackDb result
• src/hg/hgTables/hgTables.c
  • lines changed 1, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
• src/hg/hgc/hgc.c
  • lines changed 2, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
  • lines changed 7, context: html, text, full: html, text
    adding blastCe9SG business, this should be done from trackDb variables ...
• src/hg/inc/hdb.h
  • lines changed 7, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
• src/hg/lib/hdb.c
  • lines changed 13, context: html, text, full: html, text
    trying a cache of loadTrackDb result
  • lines changed 9, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
  • lines changed 1, context: html, text, full: html, text
    there are no calls to hTrackDb(NULL) except in obsolete hgText.c
  • lines changed 8, context: html, text, full: html, text
    back out the hTrackDb caching, doesn't work
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
• src/hg/lib/trackDb.c
  • lines changed 6, context: html, text, full: html, text
    these free operations are currently dangerous with cached tdb
  • lines changed 4, context: html, text, full: html, text
    back out the hTrackDb caching, doesn't work
• src/hg/makeDb/doc/bruMal1.txt
  • lines changed 177, context: html, text, full: html, text
    done with blastCe9SG ce9 sangerGene tblastn
  • lines changed 8, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/doc/caeJap3.txt
  • lines changed 180, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/doc/caePb2.txt
  • lines changed 181, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/doc/caeRem3.txt
  • lines changed 175, context: html, text, full: html, text
    done with blastCe9SG ce9 sangerGene tblastn
  • lines changed 12, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/doc/cb3.txt
  • lines changed 178, context: html, text, full: html, text
    done with blastCe9SG ce9 sangerGene tblastn
  • lines changed 16, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/doc/ce9.txt
  • lines changed 274, context: html, text, full: html, text
    reworked priPac1 to be priPac2 in the 10-way and working on phastCons
  • lines changed 175, context: html, text, full: html, text
    done with phastCons starting on phyloP for 10-way
• src/hg/makeDb/doc/haeCon1.txt
  • lines changed 179, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/doc/melHap1.txt
  • lines changed 173, context: html, text, full: html, text
    done with blastCe9SG ce9 sangerGene tblastn
  • lines changed 12, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/doc/melInc1.txt
  • lines changed 173, context: html, text, full: html, text
    done with blastCe9SG ce9 sangerGene tblastn
  • lines changed 12, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/doc/priPac2.txt
  • lines changed 179, context: html, text, full: html, text
    done with all 9 tblastn.ce9SG
• src/hg/makeDb/trackDb/worm/ce9/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    priPac1 has become priPac2
  • lines changed 9, context: html, text, full: html, text
    adjust priorities on the 10-way tracks and now displaying phastCons both graphs and first phyloP
  • lines changed 3, context: html, text, full: html, text
    done with 10-way alignment
• src/hg/makeDb/trackDb/worm/trackDb.ra
  • lines changed 19, context: html, text, full: html, text
    adding blastCe9SG
• src/hg/utils/makeTrackIndex/makeTrackIndex.c
  • lines changed 1, context: html, text, full: html, text
    eliminate the chrom argument from function hTrackDb() in hdb.c
• src/lib/memalloc.c
  • lines changed 1, context: html, text, full: html, text
    identify source of alloc error