Commits for galt

v241_base to v242_preview (2010-09-28 to 2010-10-05) v242

• needed quotes around echo string because of brackets
  • src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb - lines changed 5, context: html, text, full: html, text
• properly handling killing all descendants of the child that has timed out
  • src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb - lines changed 15, context: html, text, full: html, text
• fix compiler warning
  • src/hg/hgTables/great.c - lines changed 1, context: html, text, full: html, text
• Revert "fix compiler warning" This reverts commit 8670dfac348cdfd889f2124823e14927a1f5ddc2. Angie had already fixed it.
  • src/hg/hgTables/great.c - lines changed 1, context: html, text, full: html, text
• adding configurable site-specific limits for running paraFetch
  • src/hg/encode/hgEncodeSubmit/config/paraFetch.yml.sample - lines changed 11, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb - lines changed 39, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/pipeline_runner.rb - lines changed 40, context: html, text, full: html, text
• removing unneeded autoResume option from upload since paraFetch does it automatically now
  • src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/upload.rhtml - lines changed 5, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb - lines changed 1, context: html, text, full: html, text
• unfreezing loaded state to allow users to click unload, as requested by Cricket on behalf of Spain
  • src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml - lines changed 25, context: html, text, full: html, text
• oops there are quotes around the url argument
  • src/hg/encode/hgEncodeSubmit/pipeline_runner.rb - lines changed 3, context: html, text, full: html, text
• fixing parse logic - ruby strings not like python slices
  • src/hg/encode/hgEncodeSubmit/pipeline_runner.rb - lines changed 2, context: html, text, full: html, text