Commits for hiram

v241_base to v242_preview (2010-09-28 to 2010-10-05) v242

• adding bruMal1 caeJap3 haeCon1 melInc1 and melHap1
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 5, context: html, text, full: html, text
• done with genbank runs
  • src/hg/makeDb/doc/bruMal1.txt - lines changed 57, context: html, text, full: html, text
  • src/hg/makeDb/doc/caeJap3.txt - lines changed 67, context: html, text, full: html, text
  • src/hg/makeDb/doc/melHap1.txt - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/doc/melInc1.txt - lines changed 58, context: html, text, full: html, text
• done with genbank runs
  • src/hg/makeDb/doc/haeCon1.txt - lines changed 237, context: html, text, full: html, text
• have phylo tree 4D calculation done and started on phastCons
  • src/hg/makeDb/doc/ce9.txt - lines changed 227, context: html, text, full: html, text
• initial files from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/worm/priPac2/description.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/priPac2/gap.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/priPac2/gold.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/priPac2/trackDb.ra - lines changed 40, context: html, text, full: html, text
• initial build and thru masking
  • src/hg/makeDb/doc/priPac2.txt - lines changed 203, context: html, text, full: html, text
• adding priPac2 to the build
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• assign blat servers and set default position to ZC101.2e, genbank all done
  • src/hg/makeDb/doc/bruMal1.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/caeJap3.txt - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/doc/haeCon1.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/melHap1.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/doc/melInc1.txt - lines changed 21, context: html, text, full: html, text
• assign blat servers and set default position to ZC101.2e
  • src/hg/makeDb/doc/priPac2.txt - lines changed 18, context: html, text, full: html, text
• now have priPac2 with lastz and rerunning multiz with priPac2
  • src/hg/makeDb/doc/ce9.txt - lines changed 83, context: html, text, full: html, text
• add notes about usr local apache symlinks for convenience
  • src/product/README.building.source - lines changed 14, context: html, text, full: html, text