Commits for vsmalladi

v241_base to v242_preview (2010-09-28 to 2010-10-05) v242

• Updated track labels and descriptions to comply with changes addressed by Lab
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra - lines changed 94, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.html - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra - lines changed 205, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra - lines changed 121, context: html, text, full: html, text
• Updated Mouse Strain and Age metadata for CH12 and MEL cell lines
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 295, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra - lines changed 12, context: html, text, full: html, text
• Added 7 submissions in trackDb and metaDb
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 682, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 133, context: html, text, full: html, text
• Fixed typo in checked strains.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra - lines changed 1, context: html, text, full: html, text
• Added comment to descirbe the B10.H-2aH-4bp/Wts is associated with the CH12 cell line
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 1, context: html, text, full: html, text
• Added experiment vars for Cshl Short RNA-seq data
  • src/hg/encode/encodeValidate/config/expVars.ra - lines changed 5, context: html, text, full: html, text
• Updated dataType i.e Assay from ShortRnaSeq to RnaSeq to be consistent
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 48, context: html, text, full: html, text
• Added metaData for submission 2205
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 101, context: html, text, full: html, text
• Updated make file to include .ra for LICR Histone metadata
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile - lines changed 2, context: html, text, full: html, text
• Removed the tag that this was a preliminary track description
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.html - lines changed 1, context: html, text, full: html, text
• Updated RnaExtract to be short total from short. Providing more information about meta-data. Also deleted reference to parentTables that have no function
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 58, context: html, text, full: html, text