Commits for tdreszer
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v243_preview2 to v243_base (2010-10-26 to 2010-11-02) v243
- Reusable blueLines bg image must distinguish reverse complement, and insideX doesn't do that for some strange reason.
- src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
- Loader should not fail on preexisting files. That is the validator's job.
- src/hg/encode/encodeLoad/doEncodeLoad.pl - lines changed 4, context: html, text, full: html, text
- Oops, missed one.
- src/hg/encode/encodeLoad/doEncodeLoad.pl - lines changed 4, context: html, text, full: html, text
- Added 5 new cell lines, on new SOP and 3 new treatments for Crawford
- src/hg/encode/encodeValidate/config/cv.ra - lines changed 101, context: html, text, full: html, text
- Minor corrections to Crawfords most recent cells and treatments
- src/hg/encode/encodeValidate/config/cv.ra - lines changed 20, context: html, text, full: html, text
- 40 resubmissions added/changed a lot of metadata
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 2042, context: html, text, full: html, text
- Added support for getting antibodies by target. Added support for 'label' as the last field. Added support for labs and dataTypes
- src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 490, context: html, text, full: html, text
- Links to controlled vocabulary for antibodies will now use target to get set of antibodies
- Added typeOfTerm category to allow defining controlled vocabulary and other metadata terms in one place. Putting this in the cv.ra keeps it coordinated with the cv. This will probably be used by hgEncodeVocab to display term definitions. It should be used by Track Search for the white list of searchble terms and '...' metadata to distinguish linkable terms.
- src/hg/encode/encodeValidate/config/cv.ra - lines changed 443, context: html, text, full: html, text
- Added sorting routines for slPairs when the val is a string. Will be used by cv terms whitelist
- Moved mdb/cv terms white list to mdb library code. Now it can be used both by trackSearch and by metadata '...' table which will have links for select terms to hgEncodeVocab.
- src/hg/hgTracks/searchTracks.c - lines changed 85, context: html, text, full: html, text
- Fixed sizing of whiteList array
- Fixed problem with bam views. This fix extended to psl and genePred views which would also have had problems. This code also cleans up bam cfg spacing and adds links to selected cv.ra terms found in the '...' metadata table
- Kate wants antibody as first column of table even though sort is by target, then antibidy
- src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 13, context: html, text, full: html, text
- Wrangling to get round 2 of Broad's hg19 submissions. Peaks are still missing
- src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt - lines changed 235, context: html, text, full: html, text
- Fixed help typos
- src/hg/makeDb/mdbUpdate/mdbPrint.c - lines changed 2, context: html, text, full: html, text
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