Commits for vsmalladi

v243_preview2 to v243_base (2010-10-26 to 2010-11-02) v243

• Split TFBS and Histone data for UW. This is a trial and not the entire deal
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 1415, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 1652, context: html, text, full: html, text
• Updated metadata for new UW TFBS track. Not complete need to improve
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 1295, context: html, text, full: html, text
• Updated the Track long label to include Sites
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 1, context: html, text, full: html, text
• Updated metaData for Uwtfbs and Histone for inputType to controlId split.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 71, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 53, context: html, text, full: html, text
• Cleaned up inputType from metaDb
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 4, context: html, text, full: html, text
• Preliminary metadata for UW TFBS data.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 4541, context: html, text, full: html, text
• Updated trackDb and metadata make file.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 11, context: html, text, full: html, text
• Updated trackDb error for referencing other tables of input
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 18, context: html, text, full: html, text
• Removed all mentioned of rank from metaData,long labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 307, context: html, text, full: html, text
• Removed CTCF tacks that were added during the merge
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 163, context: html, text, full: html, text
• Updated the track configuration to display replicate
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 337, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 2, context: html, text, full: html, text
• Updated typo's when trying to display replicate
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 2, context: html, text, full: html, text
• Oops. Fixed accidentl delete
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 1, context: html, text, full: html, text
• Updated validation document nameing, so that links to documents would work. Also sperated two antibodies out
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 35, context: html, text, full: html, text
• Updated validation document nameing, so that links to documents would work. Also sperated two antibodies for target YY1
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 1, context: html, text, full: html, text
• Trying to work on filter composite option
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRrbs.ra - lines changed 302, context: html, text, full: html, text
• :Left in line from resolving merge conflict
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
• Added submission 2515
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 157, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra - lines changed 28, context: html, text, full: html, text
• Added treatment for Gliobla cells
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra - lines changed 3, context: html, text, full: html, text
• Displayed 9 submissions for UTA chip Seq
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 970, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra - lines changed 302, context: html, text, full: html, text
• Added correct term for Estrogen treatment
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra - lines changed 1, context: html, text, full: html, text
• Updated target lables for antibodies, addressing issue 1545
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 12, context: html, text, full: html, text
• updated UW Histone track with 67 submissions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 8034, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra - lines changed 1571, context: html, text, full: html, text
• Split CTCF and Input data for UW TFBS data from all Uw Histone data
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 733, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 166, context: html, text, full: html, text