dafa0da9b989d8661390ed4cfec8adcc68d5f3de
angie
  Mon Oct 18 16:02:34 2010 -0700
Redmine Bug #1304 (alignment numbering wrong when "viewing parts ofalignment"): fixed bug I introduced into fuzzyShow.c back in 2007.
Also in hgc.c, trim the "Alignment of <query> to <chrN:s-e>" message
at top of alignment display frame to query bounds (not just viewing
window), to be more consistent with message in whole-alignment view.

diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 37666b2..ce2d3a4 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -6436,8 +6436,8 @@
 
 if (restrictToWindow)
     {
-    partTStart = winStart;
-    partTEnd = winEnd;
+    partTStart = max(wholePsl->tStart, winStart);
+    partTEnd = min(wholePsl->tEnd, winEnd);
     }
 
 /* Write body heading info. */