File Changes for markd

v242_base to v243_preview (2010-10-12 to 2010-10-19) v243

• src/hg/blastToPsl/blastXmlToPsl.c
  • lines changed 47, context: html, text, full: html, text
    added handling of misidentified psiblast files
• src/hg/blastToPsl/tests/expected/misclassedPsiBlastTest.bscores
  • lines changed 11, context: html, text, full: html, text
    added handling of misidentified psiblast files
• src/hg/blastToPsl/tests/expected/misclassedPsiBlastTest.psl
  • lines changed 10, context: html, text, full: html, text
    added handling of misidentified psiblast files
• src/hg/blastToPsl/tests/input/misclassed.psiBlast.xml
  • lines changed 483, context: html, text, full: html, text
    added handling of misidentified psiblast files
• src/hg/blastToPsl/tests/makefile
  • lines changed 10, context: html, text, full: html, text
    added handling of misidentified psiblast files
• src/hg/makeDb/doc/rheMac2.txt
  • lines changed 38, context: html, text, full: html, text
    added RefSeq gene predictions to Rhesus at the request of NCBI
  • lines changed 23, context: html, text, full: html, text
    converted rheMac2 refPreds to full RefSeq annotation track at request of NCBI
  • lines changed 5, context: html, text, full: html, text
    redid refseq annonotation track to include all refseq mappings
• src/hg/makeDb/doc/uniProt/sp101005.txt
  • lines changed 50, context: html, text, full: html, text
    imported new uniport
• src/hg/makeDb/trackDb/rhesus/refGenePred.html
  • lines changed 31, context: html, text, full: html, text
    added RefSeq gene predictions to Rhesus at the request of NCBI
  • lines changed 31, context: html, text, full: html, text
    redid refseq annonotation track to include all refseq mappings
• src/hg/makeDb/trackDb/rhesus/refSeqAnnon.html
  • lines changed 32, context: html, text, full: html, text
    converted rheMac2 refPreds to full RefSeq annotation track at request of NCBI
• src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    added RefSeq gene predictions to Rhesus at the request of NCBI
  • lines changed 2, context: html, text, full: html, text
    converted rheMac2 refPreds to full RefSeq annotation track at request of NCBI
• src/hg/makeDb/trackDb/rhesus/trackDb.ra
  • lines changed 12, context: html, text, full: html, text
    added RefSeq gene predictions to Rhesus at the request of NCBI
  • lines changed 5, context: html, text, full: html, text
    converted rheMac2 refPreds to full RefSeq annotation track at request of NCBI
  • lines changed 11, context: html, text, full: html, text
    redid refseq annonotation track to include all refseq mappings
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    added RefSeq gene predictions to Rhesus at the request of NCBI
  • lines changed 1, context: html, text, full: html, text
    converted rheMac2 refPreds to full RefSeq annotation track at request of NCBI
• src/hg/protein/makefile
  • lines changed 1, context: html, text, full: html, text
    spDbAddVarSplice was not being built
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 19, context: html, text, full: html, text
    added options to control max number of errors reports