File Changes for hiram

v243_preview to v243_preview2 (2010-10-19 to 2010-10-26) v243

• src/hg/checkTableCoords/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    fixup stderr reroute
• src/hg/makeDb/doc/bruMal1.txt
  • lines changed 33, context: html, text, full: html, text
    finishing up melHap1 and bruMal1
• src/hg/makeDb/doc/caeJap3.txt
  • lines changed 23, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
  • lines changed 34, context: html, text, full: html, text
    caejap3 in pushQ and default tracks for caeJap3 and priPac2
• src/hg/makeDb/doc/cb3.txt
  • lines changed 48, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/doc/ce9.txt
  • lines changed 11, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/doc/haeCon1.txt
  • lines changed 31, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
• src/hg/makeDb/doc/melHap1.txt
  • lines changed 30, context: html, text, full: html, text
    finishing up melHap1 and bruMal1
• src/hg/makeDb/doc/melInc1.txt
  • lines changed 30, context: html, text, full: html, text
    done with melInc1 default tracks and documentation and in the pushQ
• src/hg/makeDb/doc/priPac2.txt
  • lines changed 79, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
  • lines changed 35, context: html, text, full: html, text
    priPac2 in the pushQ
  • lines changed 15, context: html, text, full: html, text
    caejap3 in pushQ and default tracks for caeJap3 and priPac2
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    adding priPac2
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 19, context: html, text, full: html, text
    Added priPac2.
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    adding priPac2
• src/hg/makeDb/hgFakeAgp/makefile
  • lines changed 1, context: html, text, full: html, text
    do not need jkap lib
• src/hg/makeDb/schema/all.joiner
  • lines changed 12, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
  • lines changed 4, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
  • lines changed 4, context: html, text, full: html, text
    done with melInc1 default tracks and documentation and in the pushQ
  • lines changed 5, context: html, text, full: html, text
    finishing up melHap1 and bruMal1
• src/hg/makeDb/schema/joinerCheck/joinerCheck.c
  • lines changed 13, context: html, text, full: html, text
    verify specified database is legitimate
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 112, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/caeJap3/description.html
  • lines changed 70, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/caeJap3/gap.html
  • lines changed 63, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/caeJap3/gold.html
  • lines changed 25, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/caeJap3/trackDb.ra
  • lines changed 41, context: html, text, full: html, text
    caejap3 in pushQ and default tracks for caeJap3 and priPac2
• src/hg/makeDb/trackDb/worm/caePb2/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/cb3/trackDb.ra
  • lines changed 17, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/ce9/description.html
  • lines changed 106, context: html, text, full: html, text
    up to date documentation pages
• src/hg/makeDb/trackDb/worm/ce9/gap.html
  • lines changed 70, context: html, text, full: html, text
    up to date documentation pages
• src/hg/makeDb/trackDb/worm/ce9/gold.html
  • lines changed 29, context: html, text, full: html, text
    up to date documentation pages
• src/hg/makeDb/trackDb/worm/ce9/trackDb.ra
  • lines changed 17, context: html, text, full: html, text
    setting default visibilities
• src/hg/makeDb/trackDb/worm/haeCon1/description.html
  • lines changed 40, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
• src/hg/makeDb/trackDb/worm/haeCon1/gap.html
  • lines changed 60, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
• src/hg/makeDb/trackDb/worm/haeCon1/gold.html
  • lines changed 25, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
• src/hg/makeDb/trackDb/worm/haeCon1/trackDb.ra
  • lines changed 41, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
• src/hg/makeDb/trackDb/worm/melHap1/description.html
  • lines changed 4, context: html, text, full: html, text
    finishing up melHap1 and bruMal1
• src/hg/makeDb/trackDb/worm/melHap1/gap.html
  • lines changed 63, context: html, text, full: html, text
    finishing up melHap1 and bruMal1
• src/hg/makeDb/trackDb/worm/melHap1/gold.html
  • lines changed 19, context: html, text, full: html, text
    finishing up melHap1 and bruMal1
• src/hg/makeDb/trackDb/worm/melInc1/gap.html
  • lines changed 63, context: html, text, full: html, text
    done with melInc1 default tracks and documentation and in the pushQ
• src/hg/makeDb/trackDb/worm/melInc1/gold.html
  • lines changed 19, context: html, text, full: html, text
    done with melInc1 default tracks and documentation and in the pushQ
• src/hg/makeDb/trackDb/worm/melInc1/trackDb.ra
  • lines changed 48, context: html, text, full: html, text
    done with melInc1 default tracks and documentation and in the pushQ
• src/hg/makeDb/trackDb/worm/priPac2/description.html
  • lines changed 55, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/priPac2/gap.html
  • lines changed 61, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/priPac2/gold.html
  • lines changed 34, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
  • lines changed 1, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
• src/hg/makeDb/trackDb/worm/priPac2/trackDb.ra
  • lines changed 19, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
  • lines changed 44, context: html, text, full: html, text
    caejap3 in pushQ and default tracks for caeJap3 and priPac2
• src/hg/makeDb/trackDb/worm/trackDb.chainNet.ra
  • lines changed 48, context: html, text, full: html, text
    adding ce7ChainNet
• src/hg/makeDb/trackDb/worm/trackDb.ra
  • lines changed 56, context: html, text, full: html, text
    wrapping up ce9,cb3,caeJap3,caePb2,priPac2 with default tracks and visibilities and all.joiner definitions
• src/hg/makeDb/trackDb/worm/ws210Gene.html
  • lines changed 13, context: html, text, full: html, text
    catching up ce9 tracks on the nematodes
• src/hg/utils/automation/makeDownloads.pl
  • lines changed 1, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
• src/hg/utils/automation/makePushQSql.pl
  • lines changed 5, context: html, text, full: html, text
    done with haeCon1 default tracks and assembly documentation
  • lines changed 8, context: html, text, full: html, text
    up to date genbank table listing
• src/hg/utils/phyloTrees/ce9.10way.dissect.txt
  • lines changed 133, context: html, text, full: html, text
    tree diagrams for 10-way nematodes
• src/hg/utils/phyloTrees/ce9.10way.nh
  • lines changed 3, context: html, text, full: html, text
    tree diagrams for 10-way nematodes
• src/hg/utils/phyloTrees/ce9.chainNet.pl
  • lines changed 120, context: html, text, full: html, text
    tree diagrams for 10-way nematodes
• src/product/README.install
  • lines changed 20, context: html, text, full: html, text
    add note about locking down the trash directory
• src/product/README.trackDb
  • lines changed 4, context: html, text, full: html, text
    add note about wiki page and the other options to avoid extFile confusion