6333eadd4ea8c01f45f94086350c76861063c059 larrym Mon Nov 15 11:55:00 2010 -0800 support codon numbering checkbox in hgTrackUi diff --git src/hg/hgTracks/simpleTracks.c src/hg/hgTracks/simpleTracks.c index f346988..0ef99f8 100644 --- src/hg/hgTracks/simpleTracks.c +++ src/hg/hgTracks/simpleTracks.c @@ -2565,31 +2565,31 @@ if (psl && baseColorNeedsCodons) { boolean isXeno = ((tg->subType == lfSubXeno) || (tg->subType == lfSubChain) || startsWith("mrnaBla", tg->table)); int sizeMul = pslIsProtein(psl) ? 3 : 1; lf->codons = baseColorCodonsFromPsl(lf, psl, sizeMul, isXeno, maxShade, drawOpt, tg); } else if (drawOpt > baseColorDrawOff) { struct genePred *gp = NULL; if (startsWith("genePred", tg->tdb->type)) gp = (struct genePred *)(lf->original); if (gp && gp->cdsStart != gp->cdsEnd) { char var[256]; - safef(var, sizeof(var), "%sCodonNumbering", tg->tdb->track); + safef(var, sizeof(var), "%s.%s", tg->tdb->track, CODON_NUMBERING_SUFFIX); lf->codons = baseColorCodonsFromGenePred(lf, gp, (drawOpt != baseColorDrawDiffCodons), cartUsualBoolean(cart, var, FALSE)); } } if (psl && drawOpt == baseColorDrawCds && !zoomedToCdsColorLevel) baseColorSetCdsBounds(lf, psl, tg); tallStart = lf->tallStart; tallEnd = lf->tallEnd; if ((tallStart == 0 && tallEnd == 0) && !sameWord(tg->table, "jaxQTL3")) { // sometimes a bed <8 will get passed off as a bed 8, tsk tsk tallStart = lf->start; tallEnd = lf->end; } x1 = round((double)((int)lf->start-winStart)*scale) + xOff;