Commits for markd
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v243_base to v244_preview (2010-11-02 to 2010-11-16) v244
- added support for GFF3 discontinuous features
- src/hg/utils/gff3ToGenePred/tests/expected/discontinuousTest.gp - lines changed 3, context: html, text, full: html, text
- src/hg/utils/gff3ToGenePred/tests/expected/errCases1Test.out - lines changed 5, context: html, text, full: html, text
- src/hg/utils/gff3ToGenePred/tests/input/discontinuous.gff3 - lines changed 31, context: html, text, full: html, text
- src/hg/utils/gff3ToGenePred/tests/makefile - lines changed 5, context: html, text, full: html, text
- src/lib/tests/expected/gff3DiscontiousTest.out - lines changed 31, context: html, text, full: html, text
- src/lib/tests/expected/gff3ErrorCasesTest.err - lines changed 4, context: html, text, full: html, text
- src/lib/tests/expected/gff3SacCerTest.out - lines changed 36, context: html, text, full: html, text
- src/lib/tests/input/discontinuous.gff3 - lines changed 31, context: html, text, full: html, text
- added ccdsNotes
- src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
- added problem case RefSeq NR to doc
- src/hg/makeDb/genbank/doc/to-do.txt - lines changed 3, context: html, text, full: html, text
- added felCat4 N-SCAN
- src/hg/makeDb/doc/felCat4.txt - lines changed 24, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cat/felCat4/trackDb.ra - lines changed 2, context: html, text, full: html, text
- librarized the cigar to psl code
- src/hg/utils/gff3ToPsl/gff3ToPsl.c - lines changed 64, context: html, text, full: html, text
- renamed cigar converter to make it clear that this is the GFF3 cigar format, not the ENSEMBL cigar
- src/hg/utils/gff3ToPsl/gff3ToPsl.c - lines changed 1, context: html, text, full: html, text
- fixed error case caused by fixing typo in error message
- src/lib/tests/expected/gff3ErrorCasesTest.err - lines changed 1, context: html, text, full: html, text
- fixed result of cascading yank and put error (renamed track to drop extra n)
- src/hg/makeDb/doc/rheMac2.txt - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rhesus/refSeqAnno.html - lines changed 32, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rhesus/refSeqAnnon.html - lines changed 32, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rhesus/trackDb.ra - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
- removed print of sql stats to stderr, which was there for debugging socket leak in hgTables
- src/hg/hgTables/hgTables.c - lines changed 2, context: html, text, full: html, text
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