File Changes for hiram

v245_preview2 to v245_base (2010-12-21 to 2011-01-04) v245

• src/hg/hgc/hgc.c
  • lines changed 2, context: html, text, full: html, text
    otherOrg is actually thisOrg
• src/hg/htdocs/images/phylo/danRer7_8way.png
  • lines changed 0, context: html, text, full: html, text
    adding 8-way alignment phylo tree for danRer7
• src/hg/lib/liftOver.c
  • lines changed 3, context: html, text, full: html, text
    strand mixup on multiple mappings
• src/hg/makeDb/doc/danRer6.txt
  • lines changed 12, context: html, text, full: html, text
    liftOver from danRer6 to danRer7 and fr2 lastz to danRer7 and preparing for 8-way alignment
• src/hg/makeDb/doc/danRer7.txt
  • lines changed 255, context: html, text, full: html, text
    liftOver from danRer6 to danRer7 and fr2 lastz to danRer7 and preparing for 8-way alignment
  • lines changed 83, context: html, text, full: html, text
    running autoMultiz for 8-way
  • lines changed 73, context: html, text, full: html, text
    8-way done and annotated with Irows
  • lines changed 643, context: html, text, full: html, text
    completed 8-way phastCons and phyloP
  • lines changed 297, context: html, text, full: html, text
    have phastCons and phyloP 8way on danRer7 for vert and fish groups
  • lines changed 3, context: html, text, full: html, text
    fixup up comments about tree diagrams
• src/hg/makeDb/doc/hg19.txt
  • lines changed 6, context: html, text, full: html, text
    have phastCons and phyloP 8way on danRer7 for vert and fish groups
• src/hg/makeDb/doc/panTro2.txt
  • lines changed 5, context: html, text, full: html, text
    adding denisova track for chimp
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 2, context: html, text, full: html, text
    enable automatic generation of upstream files for danRer7
• src/hg/makeDb/schema/all.joiner
  • lines changed 2, context: html, text, full: html, text
    adding danRer7
• src/hg/makeDb/trackDb/chimp/trackDb.denisova.ra
  • lines changed 21, context: html, text, full: html, text
    adding denisova track for chimp
• src/hg/makeDb/trackDb/chimp/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    adding denisova track for chimp
• src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    setting data for fr2 danRer7 chain net
• src/hg/makeDb/trackDb/human/bamSLDenisova.html
  • lines changed 2, context: html, text, full: html, text
    adding denisova track for chimp
• src/hg/makeDb/trackDb/zebrafish/danRer7/cons8way.html
  • lines changed 414, context: html, text, full: html, text
    initial contents pattern from hg19 46-way
• src/hg/makeDb/trackDb/zebrafish/danRer7/trackDb.ra
  • lines changed 35, context: html, text, full: html, text
    adding 8-way multiz business
  • lines changed 149, context: html, text, full: html, text
    have phastCons and phyloP 8way on danRer7 for vert and fish groups
• src/lib/pipeline.c
  • lines changed 1, context: html, text, full: html, text
    pid can be an odd size, cast it to int for printing
• src/product/ex.hg.conf
  • lines changed 9, context: html, text, full: html, text
    the wikiTrack should be off by default
• src/utils/sizeof/makefile
  • lines changed 4, context: html, text, full: html, text
    adding compile target
• src/utils/sizeof/sizeof.c
  • lines changed 21, context: html, text, full: html, text
    add byte order display
  • lines changed 14, context: html, text, full: html, text
    much easier and actually accurate method for byteOrder