b95ff3835509b242bd9007ba55c4f60c1022da47
markd
  Thu Dec 30 14:58:16 2010 -0800
moved to programs to hg/utils, fixed build of distributed utilities
diff --git src/hg/makefile src/hg/makefile
index bdb9f69..b20e2dc 100644
--- src/hg/makefile
+++ src/hg/makefile
@@ -13,32 +13,32 @@
 
 ifdef LOWELAB
     BROWSER_BINS += archaeStuff/tooltip archaeStuff/chooseorg 
 endif
 
 BROWSER_LOADERS = makeDb/hgLoadBed makeDb/hgLoadWiggle makeDb/hgLoadMaf
 
 ifneq ($(findstring $(shell hostname),hgwdev hgwbeta),)
     ENCODE_FILES =
 endif
 
 
 TEST_DIRS = lib autoDtd autoSql blastToPsl checkTableCoords embossToPsl \
             genePredSingleCover genePredHisto genePredToGtf \
 	    genePredToMafFrames gbGetEntries hgGetAnn liftAcross \
-            mrnaToGene overlapSelect pslCDnaFilter pslDiff pslHisto \
-            pslMap pslPartition pslSelect pslStats pslSwap spideyToPsl \
+            mrnaToGene pslCDnaFilter pslDiff pslHisto \
+            pslPartition pslSelect pslStats pslSwap spideyToPsl \
 	    sqlToXml xmlToSql
 
 BROKEN_TEST_DIRS = liftOver scaffoldFaToAgp
 
 # List of directories to build
 USE_DIRS = $(UTIL_DIRS)
 
 BAD_DIRS = \
 	altGraph \
 	cgiExample \
 	geneOverlap \
 	hgBatch \
 	makeSeqs \
 	oneShot \
 	synMap \
@@ -129,47 +129,45 @@
 	near/hgClusterGenes \
 	near/hgEmblProtLinks \
 	near/hgExpDistance \
 	near/hgGoAssociation \
 	near/hgKnownToSuper \
 	near/hgMapToGene \
 	near/hgMapViaSwissProt \
 	near/hgProtIdToGenePred \
 	near/hgWormLinks \
 	near/pepPredToFa \
 	near/hgNearTest \
 	near/hgNetDist \
 	near/knownToHprd \
 	nci60 \
 	orthoMap \
-	overlapSelect \
 	patCount \
 	perf \
 	protein \
 	pslCDnaFilter \
 	pslCat \
 	pslCheck \
 	pslCoverage \
 	pslDiff \
 	pslDropOverlap \
 	pslFilter \
 	pslFilterPrimers \
 	pslGlue \
 	pslHisto \
 	pslHitPercent \
 	pslIntronsOnly \
-	pslMap \
 	pslPartition \
 	pslPairs \
 	pslPretty \
 	pslQuickFilter \
 	pslRecalcMatch \
 	pslReps \
 	pslSelect \
 	pslSimp \
 	pslSort \
 	pslSortAcc \
 	pslSplitOnTarget \
 	pslStats \
 	pslSwap \
 	pslToBed \
 	pslUnpile \