b95ff3835509b242bd9007ba55c4f60c1022da47
markd
  Thu Dec 30 14:58:16 2010 -0800
moved to programs to hg/utils, fixed build of distributed utilities
diff --git src/hg/overlapSelect/selectTable.h src/hg/overlapSelect/selectTable.h
deleted file mode 100644
index 151e822..0000000
--- src/hg/overlapSelect/selectTable.h
+++ /dev/null
@@ -1,71 +0,0 @@
-/* selectTable - module that contains ranges use to select.  This module
- * functions as a global object. */
-#ifndef SELECT_TABLE_H
-#define SELECT_TABLE_H
-#include "binRange.h"
-#include "hash.h"
-struct chromAnnReader;
-struct chromAnnRef;
-#include "chromAnnMap.h"
-
-enum selectOpts
-/* selection table options */
-{
-    selExcludeSelf    = 0x01,    /* skipping matching records */
-    selStrand         = 0x02,    /* select by strand */
-    selIdMatch        = 0x04,    /* ids must match and overlap  */
-    selOppositeStrand = 0x08     /* select by opposite strand */
-};
-
-struct overlapCriteria
-/* criteria for selecting */
-{
-    float threshold;        // threshold fraction
-    float thresholdCeil;    // threshold must be less than this value
-    float similarity;       // bidirectional threshold
-    float similarityCeil;   // similarity must be less than this value
-    int bases;              // number of bases
-};
-
-struct overlapAggStats
-/* aggregate overlap stats */
-{
-    float inOverlap;          // fraction of in object overlapped
-    unsigned inOverBases;     // number of bases overlaped
-    unsigned inBases;         // number of possible bases to overlap
-};
-
-struct coordCols;
-struct lineFile;
-struct chromAnn;
-
-void selectTableAddRecords(struct chromAnnReader *car);
-/* add records to the select table */
-
-int selectOverlapBases(struct chromAnn *ca1, struct chromAnn *ca2);
-/* determine the number of bases of overlaping in two annotations */
-
-float selectFracOverlap(struct chromAnn *ca, int overBases);
-/* get the fraction of ca overlapped give number of overlapped bases */
-
-float selectFracSimilarity(struct chromAnn *ca1, struct chromAnn *ca2,
-                           int overBases);
-/* get the fractions similarity betten two annotations, give number of
- * overlapped bases */
-
-boolean selectIsOverlapped(unsigned opts, struct chromAnn *inCa,
-                           struct overlapCriteria *criteria,
-                           struct chromAnnRef **overlappingRecs);
-/* Determine if a range is overlapped.  If overlappingRecs is not null, a list
- * of the of selected records is returned.  Free with slFreelList. */
-
-struct overlapAggStats selectAggregateOverlap(unsigned opts, struct chromAnn *inCa);
-/* Compute the aggregate overlap of a chromAnn */
-
-struct chromAnnMapIter selectTableFirst();
-/* iterator over select table */
-
-void selectTableFree();
-/* free selectTable structures. */
-
-#endif