b95ff3835509b242bd9007ba55c4f60c1022da47
markd
  Thu Dec 30 14:58:16 2010 -0800
moved to programs to hg/utils, fixed build of distributed utilities
diff --git src/hg/pslMap/README src/hg/pslMap/README
deleted file mode 100644
index c21a690..0000000
--- src/hg/pslMap/README
+++ /dev/null
@@ -1,25 +0,0 @@
-
-pslMap is a tool for projecting alignments to another sequence through a
-common alignment.  This is an implementation of the TransMap algorithm:
-Given alignments of
-      a -> b
-      b -> c
-
-it produces and alignment of a -> c
-
-
-Examples:
-
-Mapping cDNAs between organism using syntenic chains of genomic alignments:
-
-   # to map a psl of mouse cDNA to genomoic (mm8) alignments to hg18
-   # in mmCDna.mm8.psl
-
-   chainDir=/cluster/data/mm8/bed/blastz.hg18/axtChain
-
-   netFilter -syn $chainDir/mm8.hg18.net.gz >mm8.hg18.syn.net
-   netChainSubset -wholeChains mm8.hg18.syn.net $chainDir/mm8.hg18.all.chain.gz mm8.hg18.syn.chain
-
-   # since target of chains is mm8, we must use -swapMap option
-          
-   pslMap -chainMapFile -swapMap mmCDna.mm8.psl hg18.syn.chain mmCDna.hg18.psl