Commits for cline

v244_base to v245_preview (2010-12-07 to 2010-12-14) v245

• testing an email address encoded by encodeEmail.pl
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 7, context: html, text, full: html, text
• another test of encoded addresses
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
• Giving up on the idea of encoded email addresses
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Giving up on encoded email addresses:
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• For all Lonza cell types, replaced the specific order URL with a URL to Lonza'shome page. The reason: they changed their online catalog recently, making all specific order URLs invalid. There's no reason to assume that they won't do so again. I believe that maintaining specific order URLs is more trouble than it's worth, given that the users can enter the catalog number in the online catalog themselves.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 27, context: html, text, full: html, text
• Added instructions for building Rfam, which is used as an intermediary in building UCSC Genes
  • src/hg/makeDb/doc/hg19.txt - lines changed 43, context: html, text, full: html, text
• Minor file renaming in the Rfam build
  • src/hg/makeDb/doc/hg19.txt - lines changed 4, context: html, text, full: html, text
• Added commands for incorporating data from the tRNAs and Rfam repositories
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh - lines changed 37, context: html, text, full: html, text
• Updating the ordering information for HRCE, by request of Rajinder Kaul from UW
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/near/hgMapToGene/hgMapToGene.c - lines changed 25, context: html, text, full: html, text
• Moving a load of changes to beta
  • src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 1563, context: html, text, full: html, text