Commits for hiram

v244_base to v245_preview (2010-12-07 to 2010-12-14) v245

• cron scripts running on hgnfs1 as of 08 Dec 2010
  • src/hg/utils/refreshNamedSessionCustomTracks/beta.trashCleanMonitor.sh - lines changed 79, context: html, text, full: html, text
  • src/hg/utils/refreshNamedSessionCustomTracks/beta.trashCleaner.csh - lines changed 267, context: html, text, full: html, text
  • src/hg/utils/refreshNamedSessionCustomTracks/rr.trashCleanMonitor.sh - lines changed 77, context: html, text, full: html, text
  • src/hg/utils/refreshNamedSessionCustomTracks/rr.trashCleaner.csh - lines changed 286, context: html, text, full: html, text
• indicate grp creation for denisova assembly
  • src/hg/makeDb/doc/hg18.txt - lines changed 5, context: html, text, full: html, text
• adding denisova sequence to the display
  • src/hg/makeDb/trackDb/human/trackDb.denisova.ra - lines changed 15, context: html, text, full: html, text
• add KNETFILE_HOOKS information
  • src/product/scripts/browserEnvironment.txt - lines changed 2, context: html, text, full: html, text
• adding danRer7 definition
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 15, context: html, text, full: html, text
• now running genbank
  • src/hg/makeDb/doc/danRer7.txt - lines changed 155, context: html, text, full: html, text
• removing pk from the kluster hubs
  • src/hg/utils/automation/HgAutomate.pm - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/automation/doHgNearBlastp.pl - lines changed 2, context: html, text, full: html, text
• better specification of danRer7.11.ooc file location
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• broken check-in
  • src/hg/utils/automation/HgAutomate.pm - lines changed 1, context: html, text, full: html, text
• updated denisova documentation
  • src/hg/makeDb/trackDb/human/denisova.html - lines changed 52, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.denisova.ra - lines changed 31, context: html, text, full: html, text
• fix bwa reference
  • src/hg/makeDb/trackDb/human/denisova.html - lines changed 2, context: html, text, full: html, text
• Added danRer7.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank
  • src/hg/makeDb/doc/danRer7.txt - lines changed 8, context: html, text, full: html, text
• added Neandertal contigs bam
  • src/hg/makeDb/doc/hg19.txt - lines changed 47, context: html, text, full: html, text
• trying to clean up git garbage
  • src/hg/htdocs/ENCODE/downloads.html - lines changed 10, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hg18ToHg19LiftOver.html - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/images/17.jpg - lines changed 0, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDgf.ra - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwDgf.ra - lines changed 1247, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/targetScanS.html - lines changed 57, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.html - lines changed 70, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra - lines changed 261, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 130, context: html, text, full: html, text
• adding neandertal bam contigs
  • src/hg/makeDb/doc/hg19.txt - lines changed 47, context: html, text, full: html, text
• initial assembly in the pushQ
  • src/hg/makeDb/doc/danRer7.txt - lines changed 33, context: html, text, full: html, text
• adding overrides for ntHumChimpCodingDiff and ntSssTop5p
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 4, context: html, text, full: html, text