Commits for cline

v245_preview to v245_preview2 (2010-12-14 to 2010-12-21) v245

• Debugged some unix commands on the Rfam stuff. Replaced the erroneous hgsql -E with hgsql -e. In one place, added the hgsql database where it was missing
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh - lines changed 20, context: html, text, full: html, text
• Accepted a provisional stanza that defines a new Switchgear dataType
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• In many cases where a substrate is produced by a specific individual rather than purchased from a vendor, added a link to that person's home page (or a reasonable proxy) as order URL
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 21, context: html, text, full: html, text
• Added the antibody GATA1_(SC-266)
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 16, context: html, text, full: html, text
• Fixed a typo in the registration of GATA1_SC266
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• fixed one more typo in the validation filename
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• After learning that the function bedLength duplicates the pre-existing function bedTotalBlockSize, removed bedLength and replaced calls to bedLength with calls to bedTotalBlockSize
  • src/hg/near/hgMapToGene/hgMapToGene.c - lines changed 8, context: html, text, full: html, text
• Resolving a conflicted merge. (1) Removed the Provisional keyword from the new Switchgear data type (2) in cases where a person's email address had served as the order URL, removed the email address and provided a link to the person's home page (or best reasonable proxy) instead
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 51, context: html, text, full: html, text
• Removed some extraneous merge information
  • src/hg/near/hgMapToGene/hgMapToGene.c - lines changed 19, context: html, text, full: html, text
• Added the antibody SETDB_(SC-66884) for the Farnham lab
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 18, context: html, text, full: html, text
• Added a comment on where to place the keyword 'Provisional' when modifying this file
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 8, context: html, text, full: html, text
• cleaned up the new stanza for Setdb
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Copying one batch of commits from alpha to beta
  • src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 77, context: html, text, full: html, text