Commits for cricket

v245_preview to v245_preview2 (2010-12-14 to 2010-12-21) v245

• added DukeAffyExon and Suny Switchgear
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 3, context: html, text, full: html, text
• added the new metaData for DukeAffyExon
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeDukeAffyExon.ra - lines changed 316, context: html, text, full: html, text
• update the matrix
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.ra - lines changed 8, context: html, text, full: html, text
• changed DAF to have .bigWig not bedgraph
  • src/hg/encode/DAFs/2.0/ydhrRnaSeq.daf - lines changed 10, context: html, text, full: html, text
• Added a new DAF for all of CSHL support documentation
  • src/hg/encode/DAFs/2.0/cshlSupportDocs.daf - lines changed 37, context: html, text, full: html, text
• sorted the treatments
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.ra - lines changed 2, context: html, text, full: html, text
• Trying to fix the RR not having any metadata
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 2541, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.new.ra - lines changed 1002, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.ra - lines changed 1106, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.new.ra - lines changed 538, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 582, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExon.ra - lines changed 507, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 116, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 342, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.ra - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.new.ra - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.ra - lines changed 97, context: html, text, full: html, text
• a few more files for the fixing the missing metaData on the RR issue
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExon.new.ra - lines changed 448, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.new.ra - lines changed 109, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.new.ra - lines changed 324, context: html, text, full: html, text
• changing these tracks to get their data from the mdb not the trackDB. A .new file for each with alpha tags and no metaData lines and a .ra file for each with beta,public tags
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeAffyRnaChip.ra - lines changed 1873, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeCshlShortRnaSeq.ra - lines changed 1018, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeDukeAffyExonArray.ra - lines changed 1045, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeGisDnaPet.ra - lines changed 551, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeGisRnaSeq.ra - lines changed 439, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeHelicosRnaSeq.ra - lines changed 54, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeHudsonalphaCnv.ra - lines changed 103, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 287, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.new.ra - lines changed 109, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.ra - lines changed 109, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.ra - lines changed 282, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.new.ra - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExon.new.ra - lines changed 58, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExon.ra - lines changed 59, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.new.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.new.ra - lines changed 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.new.ra - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.new.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.ra - lines changed 9, context: html, text, full: html, text
• Changed long and short labels, set the defaults
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.ra - lines changed 161, context: html, text, full: html, text
• moved into the SuperTrack
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.ra - lines changed 1, context: html, text, full: html, text
• added View section, contact information, comment about the references, and data release policy
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html - lines changed 44, context: html, text, full: html, text