2a5a5ee4f6ec1c8f915175db9f4c806d06a9a69a
krish
  Fri Dec 17 22:22:59 2010 -0800
first draft of FASTA pair alignment to PSL converter
diff --git src/hg/fastaToPsl/makefile src/hg/fastaToPsl/makefile
new file mode 100644
index 0000000..3dfa88b
--- /dev/null
+++ src/hg/fastaToPsl/makefile
@@ -0,0 +1,24 @@
+include ../../inc/common.mk
+
+L += -lm
+MYLIBDIR = ../../lib/$(MACHTYPE)
+MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
+
+A = fastaToPsl
+O = fastaToPsl.o
+
+fastaToPsl: $O $(MYLIBS)
+	${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} ${L}
+	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
+
+compile:: ${O}
+	${CC} ${COPT} ${CFLAGS} -o ${A}${EXE} $O ${MYLIBS} ${L}
+
+test::
+#test:: compile
+#	cd tests && ${MAKE} test
+#	rm -f ${A}${EXE}
+
+clean::
+	rm -f ${O} fastaToPsl ${BINDIR}/fastaToPsl
+	cd tests && ${MAKE} clean