Commits for cline

v246_preview2 to v246_base (2011-01-18 to 2011-01-25) v246

• Added two new antibodies and one antibody validation document. I'd tried before, but messed up with git stash
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.html - lines changed 115, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 55, context: html, text, full: html, text
• Corrected a bug where two antibodies had vendors but not vendorIds
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Once more, trying to fix a bug where an antibody has a vendor but not vendor ID
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• trying one more time to get this antibody thing cleared up...
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Adding two new treatments for the Myers lab
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 24, context: html, text, full: html, text
• Accepted several provisional changes
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text
• Added uncBsuProt
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 4, context: html, text, full: html, text
• Cleaned up the composite name
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 2, context: html, text, full: html, text
• Adding the metadata for the UNC/BSU Proteogenomics track
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra - lines changed 39, context: html, text, full: html, text
• Added the .ra file for the UNC / BSU proteogenomics track
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
• Accepted several provisional stanzas
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 7, context: html, text, full: html, text
• Added several new antibodies for the White lab
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 75, context: html, text, full: html, text
• When adding the White lab antibodies, forgot to add a placeholder for vendor ID
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text
• Revised the text on histone families, by suggestion of Katrina
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHistoneSuper.html - lines changed 6, context: html, text, full: html, text
• Added mention of histone H5 to the track description page
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHistoneSuper.html - lines changed 1, context: html, text, full: html, text
• Accepted several provisional stanzas
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 69, context: html, text, full: html, text
• Added comments for a provisional stanza
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text
• Moving a bundle of changes from alpha to beta
  • src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 819, context: html, text, full: html, text
• Created a subdirectory of utility scripts used for testing UCSC Genes. This might not be the ideal place for this subdirectory, or even the right subdirectory organization, but I wanted to just get these scripts under revision control. They can always be moved again later
  • src/hg/txGene/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/txGene/txGeneValidation/compareModifiedFileSizes.csh - lines changed 20, context: html, text, full: html, text
  • src/hg/txGene/txGeneValidation/compareRandomSample.py - lines changed 40, context: html, text, full: html, text
  • src/hg/txGene/txGeneValidation/makefile - lines changed 7, context: html, text, full: html, text
• Added some usage information
  • src/hg/txGene/txGeneValidation/compareModifiedFileSizes.csh - lines changed 21, context: html, text, full: html, text
• Progressed in the script, added some testing ideas as comments
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh - lines changed 59, context: html, text, full: html, text