Commits for cricket

v246_preview2 to v246_base (2011-01-18 to 2011-01-25) v246

• changed the subID 3081 to the corrected number 3200
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeDukeAffyExon.ra - lines changed 106, context: html, text, full: html, text
• added the notes file
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeDukeAffyExon.release1.notes - lines changed 254, context: html, text, full: html, text
• Added Rip-seq
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
• Added shortPolyA for rnaExtract for HAIB
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 8, context: html, text, full: html, text
• added 56 new experiments for CSHLShort Release 2
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 4928, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 2125, context: html, text, full: html, text
• Added 2 new experiments
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 187, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra - lines changed 60, context: html, text, full: html, text
• Adding DAF modifications that came up during freeze submissions
  • src/hg/encode/DAFs/2.0/caltechRnaSeq.daf - lines changed 47, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/cshlShortRnaSeq.daf - lines changed 14, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/gisRnaPet.daf - lines changed 15, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibMethylRrbs.daf - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibRnaSeq.daf - lines changed 4, context: html, text, full: html, text
• added BioChain as a lab and a new mapAlgorithm
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 16, context: html, text, full: html, text
• breaking up the Caltech track into two releases
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra - lines changed 1586, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 1032, context: html, text, full: html, text
• added bigWig to maxWindowsToDraw
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• separating Caltech into 2 releases
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.html - lines changed 190, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 1, context: html, text, full: html, text
• added terms that are already in CV, not sure why they need to be here as well, but the validator kept complaining
  • src/hg/encode/encodeValidate/config/fields.ra - lines changed 11, context: html, text, full: html, text
• Separating Riken into a release 2 and adding 10 more experiments
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 1943, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 184, context: html, text, full: html, text
• added 10 more experiments
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 475, context: html, text, full: html, text
• added 2 more experiments
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra - lines changed 17, context: html, text, full: html, text
• added two more experiments and fixed the on/off defaults
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 155, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 118, context: html, text, full: html, text
• edited short and long labels of new experiments
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 1384, context: html, text, full: html, text
• added new composite HaibGenotype (CNV), created a new trackDb, added line to trackDb.wgEncode, added a new metaDb/alpha file, added a line to the makefile, added the bedLogR type to tagTypes.tab
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 1786, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra - lines changed 885, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 4, context: html, text, full: html, text
• Added signals to the second release, this caused many issues as they used to be called clusters
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 265, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 249, context: html, text, full: html, text
• updated the track description with the new one from carrie
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html - lines changed 156, context: html, text, full: html, text
• there is not a second release, there does not need to be a .new file
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.new.html - lines changed 158, context: html, text, full: html, text
• added the composite HAIB RNA-seq. The metaData is loaded, but the tracks are not
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra - lines changed 2821, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 49, context: html, text, full: html, text