Commits for galt

v246_preview2 to v246_base (2011-01-18 to 2011-01-25) v246

• fixing problem with invalid URLs with no "protocol://site/" in url, and also fixed the problem with the display of the paraFetch status as it progresses.
  • src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb - lines changed 10, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/pipeline_runner.rb - lines changed 3, context: html, text, full: html, text
• checking earlier for the right URL protocol will help users catch problems earlier
  • src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb - lines changed 9, context: html, text, full: html, text
• going back to the forking, but forking only 10 times by default instead of 16000, should still reduce peak ram usage from 3GB to just 300MB and still run fast
  • src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c - lines changed 210, context: html, text, full: html, text
• The call here to customTracksSaveCart seems superfluous and causes errors in updating the html doc
  • src/hg/hgCustom/hgCustom.c - lines changed 3, context: html, text, full: html, text
• fixing a bug with chewed up original input, and added checking for problems caused by users accidentally pasting ct data into the html documentation field
  • src/hg/lib/customTrack.c - lines changed 12, context: html, text, full: html, text
• Revert "The call here to customTracksSaveCart seems superfluous and causes errors in updating the html doc" This reverts commit fed02927c85bea25c3dc5117590aa8d46e39da72.
  • src/hg/hgCustom/hgCustom.c - lines changed 3, context: html, text, full: html, text
• fixing bugs with handling of htmlFile; and bouncing unacceptable changes rather than saving them even when they are bad
  • src/hg/lib/customFactory.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/customTrack.c - lines changed 3, context: html, text, full: html, text