07814a04f646622b4d4677e1c461899fc6573c86
hartera
  Mon Jan 3 14:47:02 2011 -0800
Changed description for score field.
diff --git src/hg/lib/genomicSuperDups.as src/hg/lib/genomicSuperDups.as
index ec05794..dda8e30 100644
--- src/hg/lib/genomicSuperDups.as
+++ src/hg/lib/genomicSuperDups.as
@@ -1,33 +1,33 @@
 table genomicSuperDups
 "Summary of large genomic Duplications (>1KB >90% similar)"
   (
   string chrom;       "Reference sequence chromosome or scaffold"
   uint chromStart;   "Start position in chromosome"
   uint chromEnd;     "End position in chromosome"
   string name;         "Other chromosome involved"
-  uint score;        "Score from 900-1000.  1000 is best"
+  uint score;        "Score based on the raw BLAST alignment score. Set to 0 and not used in later versions."
   char[1] strand;       "Value should be + or -"
   string otherChrom;   "Other chromosome or scaffold"
   uint otherStart;   "Start in other sequence"
   uint otherEnd;     "End in other sequence"
   uint otherSize;    "Total size of other sequence (otherEnd - otherStart)"
   uint uid;       "Unique id shared by the query and subject"
   uint posBasesHit;       "For future use"
   string testResult;       "For future use"
   string verdict;       "For future use"
   string chits;       "For future use"
   string ccov;       "For future use"
   string alignfile;       "alignment file path"
   uint alignL;       "spaces/positions in alignment"
   uint indelN;       "number of indels"
   uint indelS;       "indel spaces"
   uint alignB;       "bases Aligned"
   uint matchB;       "aligned bases that match"
   uint mismatchB;    "aligned bases that do not match"
   uint transitionsB;    "number of transitions"
   uint transversionsB;    "number of transversions"
   float fracMatch;    "fraction of matching bases"
   float fracMatchIndel;    "fraction of matching bases with indels"
   float jcK;          "K-value calculated with Jukes-Cantor"
   float k2K;          "Kimura K"
   )