File Changes for vsmalladi

v245_base to v246_preview (2011-01-04 to 2010-01-11) v246

• src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl
  • lines changed 2, context: html, text, full: html, text
    Added code in encodeDownlaodsPage to not show dccNotes and added description in cv.ra as type of term.
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 16, context: html, text, full: html, text
    First pieces of code to deal with new variable obtainedBy.
  • lines changed 2, context: html, text, full: html, text
    Added comments trying to figure out how subGroups is printed out.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 10, context: html, text, full: html, text
    Added 2 strains B6D2F1/J and RIII, which are associated to 416B and 3134 Mouse cell lines, respectivley. Fixed the meta-data to accomadate with updated information.
  • lines changed 8, context: html, text, full: html, text
    Added typeofTerm for obtainedBy in CV.ra
  • lines changed 8, context: html, text, full: html, text
    Added code in encodeDownlaodsPage to not show dccNotes and added description in cv.ra as type of term.
  • lines changed 2, context: html, text, full: html, text
    Added Provional tag for 2 new strains.
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwAffyExonArray.ra
  • lines changed 2, context: html, text, full: html, text
    Replaced dccNotes with dccInternalNotes.
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra
  • lines changed 14, context: html, text, full: html, text
    Replaced dccNotes with dccInternalNotes.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.new.html
  • lines changed 108, context: html, text, full: html, text
    made Release 4 html and added line in .new.ra to make the new html file.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.new.ra
  • lines changed 1, context: html, text, full: html, text
    made Release 4 html and added line in .new.ra to make the new html file.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra
  • lines changed 929, context: html, text, full: html, text
    Used new DDF to update hg19 Methyl Seq data. Update meta-data to match when the submission was first accepted into our pipeline.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 1259, context: html, text, full: html, text
    Added 7 Chip-seq submissions for the Jan freeze.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.html
  • lines changed 2, context: html, text, full: html, text
    Updated track description. Removing reference to hg18 and replaced with hg19 reference.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra
  • lines changed 189, context: html, text, full: html, text
    Used new DDF to update hg19 Methyl Seq data. Update meta-data to match when the submission was first accepted into our pipeline.
  • lines changed 1, context: html, text, full: html, text
    Fixed typo in subgroup.
  • lines changed 1, context: html, text, full: html, text
    Added release alpha to View.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
  • lines changed 247, context: html, text, full: html, text
    Added 7 Chip-seq submissions for the Jan freeze.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra
  • lines changed 16, context: html, text, full: html, text
    Updated notes with what should be done with track configuration, labels, display conventions. Need confirmation of long labels.
  • lines changed 1, context: html, text, full: html, text
    Added track name that was accidently deleted.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra
  • lines changed 24, context: html, text, full: html, text
    Updated notes with what should be done with track configuration, labels, display conventions.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra
  • lines changed 20, context: html, text, full: html, text
    Updated notes with what should be done with track configuration, labels, display conventions. Need confirmation of long labels.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 16, context: html, text, full: html, text
    Updated track short labels for views. Also update age for cell lines to immortalized.
  • lines changed 16, context: html, text, full: html, text
    Added 2 strains B6D2F1/J and RIII, which are associated to 416B and 3134 Mouse cell lines, respectivley. Fixed the meta-data to accomadate with updated information.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 14, context: html, text, full: html, text
    Updated Encode specific trackDb to clearly layout tracks with comments about tracks. Also improve orginization of track specific includes to make easy readability.
  • lines changed 2, context: html, text, full: html, text
    Implemented new release tags at compsosite level rather than subTrack level.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.newR2.ra
  • lines changed 63, context: html, text, full: html, text
    Implemented new release tags at compsosite level rather than subTrack level.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra
  • lines changed 20, context: html, text, full: html, text
    Implemented new release tags at compsosite level rather than subTrack level.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra
  • lines changed 63, context: html, text, full: html, text
    Updated track short labels for views. Also update age for cell lines to immortalized.
  • lines changed 10, context: html, text, full: html, text
    Added 2 strains B6D2F1/J and RIII, which are associated to 416B and 3134 Mouse cell lines, respectivley. Fixed the meta-data to accomadate with updated information.
  • lines changed 2, context: html, text, full: html, text
    Updated notes of possible shortlabels.
• src/hg/pythonLib/styleGuide.txt
  • lines changed 2, context: html, text, full: html, text
    Added PythonLib directory and started styleGuide.