%s: \n", attributeLabel);
char cartVar[256];
safef(cartVar, sizeof(cartVar), "%s.include_%s", track, attributeVar);
@@ -249,93 +252,101 @@
{
char autoSubmit[2048];
char *orthoTable = snp125OrthoTable(tdb, NULL);
int version = snpVersion(tdb->track);
jsInit();
if (version < 130)
snp125ValidArraySize--; // no by-1000genomes
if (isNotEmpty(orthoTable) && hTableExists(database, orthoTable))
{
snp125ExtendedNames = cartUsualBoolean(cart, "snp125ExtendedNames", FALSE);
printf("
Include Chimp state and observed human alleles in name: ");
cgiMakeCheckBox("snp125ExtendedNames",snp125ExtendedNames);
printf("
(If enabled, chimp allele is displayed first, then '>', then human alleles). ");
- printf("
\n");
+ printf("
\n");
}
+// Make wrapper table for collapsible sections:
+puts("");
+
snp125OfferGeneTracksForFunction(tdb);
//#*** Need snp125Ui funcs for backwards compat with old cart vars when these have track-specific
//#*** settings as they should:
double snp125AvHetCutoff = cartUsualDouble(cart, "snp125AvHetCutoff", SNP125_DEFAULT_MIN_AVHET);
-printf("
Minimum Average Heterozygosity: ");
+printf("
Minimum Average Heterozygosity: ");
cgiMakeDoubleVar("snp125AvHetCutoff",snp125AvHetCutoff,6);
+printf(" | \n");
int snp125WeightCutoff = cartUsualInt(cart, "snp125WeightCutoff", SNP125_DEFAULT_MAX_WEIGHT);
-printf("
Maximum Weight: ");
+printf("Maximum Weight: ");
cgiMakeIntVar("snp125WeightCutoff",snp125WeightCutoff,4);
-printf(" SNPs with higher weights are less reliable
\n");
+printf(" Range: 1, 2 or 3; SNPs with higher weights are less reliable
\n");
+printf(" | \n");
-printf("
\n"
- "Filter by Attribute
\n"
- "Check the boxes below to include SNPs with those attributes. "
+printf(" | \n");
+jsBeginCollapsibleSection(cart, tdb->track, "filterByAttribute", "Filter by Attribute", FALSE);
+printf("Check the boxes below to include SNPs with those attributes. "
"In order to be displayed, a SNP must pass the filter for each "
"category. \n"
"Some assemblies may not contain any SNPs that have some of the "
"listed attributes.\n"
"
\n");
printf("\n");
if (version <= 127)
snp125PrintFilterControls(tdb->track, "Location Type", "locType", snp125LocTypeLabels,
snp125LocTypeDataName, snp125LocTypeArraySize);
snp125PrintFilterControls(tdb->track, "Class", "class", snp125ClassLabels,
snp125ClassDataName, snp125ClassArraySize);
snp125PrintFilterControls(tdb->track, "Validation", "valid", snp125ValidLabels,
snp125ValidDataName, snp125ValidArraySize);
int funcArraySize = (version < 130) ? snp125FuncArraySize : (snp125FuncArraySize - 1);
snp125PrintFilterControls(tdb->track, "Function", "func", snp125FuncLabels,
snp125FuncDataName, funcArraySize);
snp125PrintFilterControls(tdb->track, "Molecule Type", "molType", snp125MolTypeLabels,
snp125MolTypeDataName, snp125MolTypeArraySize);
-printf("
\n");
+printf(" \n");
+jsEndCollapsibleSection();
+puts(" |