ea8b7de586447b28fdcf004a045d94891f213250
braney
  Tue Jan 11 11:58:02 2011 -0800
gencode metadata autoSql
diff --git src/hg/inc/wgEncodeGencodeRefSeq.h src/hg/inc/wgEncodeGencodeRefSeq.h
new file mode 100644
index 0000000..d8d744d
--- /dev/null
+++ src/hg/inc/wgEncodeGencodeRefSeq.h
@@ -0,0 +1,63 @@
+/* wgEncodeGencodeRefSeq.h was originally generated by the autoSql program, which also 
+ * generated wgEncodeGencodeRefSeq.c and wgEncodeGencodeRefSeq.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef WGENCODEGENCODEREFSEQ_H
+#define WGENCODEGENCODEREFSEQ_H
+
+#define WGENCODEGENCODEREFSEQ_NUM_COLS 3
+
+struct wgEncodeGencodeRefSeq
+/* Gencode metadata table of associated RefSeq mRNA or non-coding RNA and peptide accessions */
+    {
+    struct wgEncodeGencodeRefSeq *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* Transcript ID for Gencode gene */
+    char *refSeqRnaId;	/* RefSeq mRNA or non-coding RNA ID */
+    char *refSeqPepId;	/* RefSeq peptide ID for coding transcripts */
+    };
+
+void wgEncodeGencodeRefSeqStaticLoad(char **row, struct wgEncodeGencodeRefSeq *ret);
+/* Load a row from wgEncodeGencodeRefSeq table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct wgEncodeGencodeRefSeq *wgEncodeGencodeRefSeqLoad(char **row);
+/* Load a wgEncodeGencodeRefSeq from row fetched with select * from wgEncodeGencodeRefSeq
+ * from database.  Dispose of this with wgEncodeGencodeRefSeqFree(). */
+
+struct wgEncodeGencodeRefSeq *wgEncodeGencodeRefSeqLoadAll(char *fileName);
+/* Load all wgEncodeGencodeRefSeq from whitespace-separated file.
+ * Dispose of this with wgEncodeGencodeRefSeqFreeList(). */
+
+struct wgEncodeGencodeRefSeq *wgEncodeGencodeRefSeqLoadAllByChar(char *fileName, char chopper);
+/* Load all wgEncodeGencodeRefSeq from chopper separated file.
+ * Dispose of this with wgEncodeGencodeRefSeqFreeList(). */
+
+#define wgEncodeGencodeRefSeqLoadAllByTab(a) wgEncodeGencodeRefSeqLoadAllByChar(a, '\t');
+/* Load all wgEncodeGencodeRefSeq from tab separated file.
+ * Dispose of this with wgEncodeGencodeRefSeqFreeList(). */
+
+struct wgEncodeGencodeRefSeq *wgEncodeGencodeRefSeqCommaIn(char **pS, struct wgEncodeGencodeRefSeq *ret);
+/* Create a wgEncodeGencodeRefSeq out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new wgEncodeGencodeRefSeq */
+
+void wgEncodeGencodeRefSeqFree(struct wgEncodeGencodeRefSeq **pEl);
+/* Free a single dynamically allocated wgEncodeGencodeRefSeq such as created
+ * with wgEncodeGencodeRefSeqLoad(). */
+
+void wgEncodeGencodeRefSeqFreeList(struct wgEncodeGencodeRefSeq **pList);
+/* Free a list of dynamically allocated wgEncodeGencodeRefSeq's */
+
+void wgEncodeGencodeRefSeqOutput(struct wgEncodeGencodeRefSeq *el, FILE *f, char sep, char lastSep);
+/* Print out wgEncodeGencodeRefSeq.  Separate fields with sep. Follow last field with lastSep. */
+
+#define wgEncodeGencodeRefSeqTabOut(el,f) wgEncodeGencodeRefSeqOutput(el,f,'\t','\n');
+/* Print out wgEncodeGencodeRefSeq as a line in a tab-separated file. */
+
+#define wgEncodeGencodeRefSeqCommaOut(el,f) wgEncodeGencodeRefSeqOutput(el,f,',',',');
+/* Print out wgEncodeGencodeRefSeq as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* WGENCODEGENCODEREFSEQ_H */
+