abe6089145e9e63358904903bb7ad4a4e4303b3b
cline
  Tue Jan 11 12:27:57 2011 -0800
Updated peptideMapping.h after revising peptideMapping.as and peptideMapping.sql.  See the comments on those commits
diff --git src/hg/inc/peptideMapping.h src/hg/inc/peptideMapping.h
index 734d27c..7671fd5 100644
--- src/hg/inc/peptideMapping.h
+++ src/hg/inc/peptideMapping.h
@@ -6,31 +6,31 @@
 #define PEPTIDEMAPPING_H
 
 #define PEPTIDEMAPPING_NUM_COLS 10
 
 struct peptideMapping
 /* Format for genomic mappings of mass spec proteogenomic hits */
     {
     struct peptideMapping *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Peptide sequence of the hit */
     unsigned score;	/* Log e-value scaled to a score of 0 (worst) to 1000 (best) */
     char strand[2];	/* + or - */
     float rawScore;	/* Raw score for this hit, as estimated through HMM analysis */
-    char *precursorMz;	/* Precursor Mz */
+    char *spectrumId;	/* Non-unique identifier for the spectrum file */
     unsigned peptideRank;	/* Rank of this hit, for peptides with multiple genomic hits */
     unsigned peptideRepeatCount;	/* Indicates how many times this same hit was observed */
     };
 
 void peptideMappingStaticLoad(char **row, struct peptideMapping *ret);
 /* Load a row from peptideMapping table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct peptideMapping *peptideMappingLoad(char **row);
 /* Load a peptideMapping from row fetched with select * from peptideMapping
  * from database.  Dispose of this with peptideMappingFree(). */
 
 struct peptideMapping *peptideMappingLoadAll(char *fileName);
 /* Load all peptideMapping from whitespace-separated file.
  * Dispose of this with peptideMappingFreeList(). */