File Changes for vsmalladi

v246_preview to v246_preview2 (2011-01-11 to 2011-01-18) v246

• python/ucscGenomics/__init__.py
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    Moved Python Modules source to live under kent/python/ucscGenomics to be equivalent to java directory.
• python/ucscGenomics/styleGuide.txt
  • lines changed 2, context: html, text, full: html, text
    Moved Python Modules source to live under kent/python/ucscGenomics to be equivalent to java directory.
• src/hg/encode/DAFs/2.0/stanfordHg19Tfbs.daf
  • lines changed 2, context: html, text, full: html, text
    Added bam validation, that seems to have disapeard from daf.
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    Added further comments about adding obtainedBy into the subGroups.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 6, context: html, text, full: html, text
    Registered new Hydroxytamoxifen for Stam lab.
  • lines changed 15, context: html, text, full: html, text
    Registered three new treatments. DEX_100pM, EtOH_0.01pct_4hr and EtOH_0.01pct_12hr. They are variations on treatments already registerd.
  • lines changed 1, context: html, text, full: html, text
    Fixed typo in DEX_100pM registration.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 729, context: html, text, full: html, text
    Added 7 experiments for the Jan 2011 Freeze.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 3736, context: html, text, full: html, text
    Added data for the Jan Freeze. Should be all of the expected data submissions.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 11546, context: html, text, full: html, text
    Removed meta-data for 2 extraneous fastq files from hg18 that do not have corresponding experiments.
  • lines changed 11504, context: html, text, full: html, text
    Fixed error in commit 6e3f7209efb4a004797ce545f18222b810167b91 by correctly removing metaData for extraneous fastq files.
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 7, context: html, text, full: html, text
    Added data for the Jan Freeze. Should be all of the expected data submissions.
  • lines changed 2, context: html, text, full: html, text
    Added 7 experiments for the Jan 2011 Freeze.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra
  • lines changed 738, context: html, text, full: html, text
    Added 7 experiments for the Jan 2011 Freeze.
  • lines changed 6, context: html, text, full: html, text
    Chagnes default visibility of all views except Signal to hide. Update windowingFunction for Signal from maximum to mean+whiskers. Downgraded max Vertical Viewing range for Signal from 30 to 20.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
  • lines changed 4217, context: html, text, full: html, text
    Added data for the Jan Freeze. Should be all of the expected data submissions.
  • lines changed 3, context: html, text, full: html, text
    Fixed typo with refrence of HUVEC cell in subTracks, that caused the data to not be displayed.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra
  • lines changed 18, context: html, text, full: html, text
    Updated View Long labels to match Standars by Kate on issue #98 note 24
• src/hg/pythonLib/styleGuide.txt
  • lines changed 2, context: html, text, full: html, text
    Moved Python Modules source to live under kent/python/ucscGenomics to be equivalent to java directory.