Commits for angie
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v247_preview2 to v247_base (2011-02-08 to 2011-02-14) v247
- Feature #27 (table browser support for BAM): addition of BAM supportwithout enough #ifdef USE_BAM's led to compile errors without USE_BAM=1.
Fix: add stub routines to bamFile.c so that the compile won't break,
but informative error message will be printed if bamFile routines are
called. I was hoping that this would obviate most of the #ifdef USE_BAM's
currently in the tree, but actually most of those prevent CGIs from
getting into trouble by offering BAM functionality when it isn't
compiled in. So I left most current #ifdef USE_BAM's in place, but
when future new code doesn't #ifdef, at least the compile won't break.
- src/hg/encode/validateFiles/validateFiles.c - lines changed 2, context: html, text, full: html, text
- Track #671 (BDTNP for dm2): Added bdtnpDnase% to tablesIgnored for fly, thanks Greg.
- src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
- Track #671 (BDTNP for dm2): Corrected the description of regions'default vis (squish not dense), thanks Greg.
- src/hg/makeDb/trackDb/drosophila/bdtnpDnase.html - lines changed 1, context: html, text, full: html, text
- Added some clarifying comments about central.domain and central.cookie inthe context of multiple mirror hosts. Removed bogus setting
backupcentral.domain -- it is never used by the code. In retrospect, I
think central.cookie and central.domain should have been named
cookie.name and cookie.domain because they are distinct from the central
database mysql profile. It's important that multiple central databases
used by hosts in the same domain get separate cookie names, but having
the central.* prefix on both db and cookie hasn't made that obvious in
the past. :)
- MLQ #2810 (error compiling uscs genome browser): fixing a couplefunction declarations in USE_BAM=0 code, that would have been
caught by compiling with the environment variable USE_BAM=0.
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