8dedff1fa1cebac92b4a66ae13a3f94a2ed3e709
hiram
  Fri Feb 11 14:41:51 2011 -0800
adding printVmPeak() debug call to each of the big* commands
diff --git src/utils/bigWigInfo/bigWigInfo.c src/utils/bigWigInfo/bigWigInfo.c
index 115d00a..77a2e76 100644
--- src/utils/bigWigInfo/bigWigInfo.c
+++ src/utils/bigWigInfo/bigWigInfo.c
@@ -1,96 +1,98 @@
 /* bigWigInfo - Print out information about bigWig file.. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "localmem.h"
 #include "udc.h"
 #include "bigWig.h"
 #include "obscure.h"
 #include "hmmstats.h"
 
 
 static char const rcsid[] = "$Id: bigWigInfo.c,v 1.8 2010/04/28 22:56:25 braney Exp $";
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "bigWigInfo - Print out information about bigWig file.\n"
   "usage:\n"
   "   bigWigInfo file.bw\n"
   "options:\n"
   "   -udcDir=/dir/to/cache - place to put cache for remote bigBed/bigWigs\n"
   "   -chroms - list all chromosomes and their sizes\n"
   "   -zooms - list all zoom levels and their sizes\n"
   "   -minMax - list the min and max on a single line\n"
   );
 }
 
 static struct optionSpec options[] = {
    {"udcDir", OPTION_STRING},
    {"chroms", OPTION_BOOLEAN},
    {"zooms", OPTION_BOOLEAN},
    {"minMax", OPTION_BOOLEAN},
    {NULL, 0},
 };
 
 void printLabelAndLongNumber(char *label, long long l)
 /* Print label: 1,234,567 format number */
 {
 printf("%s: ", label);
 printLongWithCommas(stdout, l);
 printf("\n");
 }
 
 void bigWigInfo(char *fileName)
 /* bigWigInfo - Print out information about bigWig file.. */
 {
 struct bbiFile *bwf = bigWigFileOpen(fileName);
 
 if (optionExists("minMax"))
     {
     struct bbiSummaryElement sum = bbiTotalSummary(bwf);
     printf("%f %f\n", sum.minVal, sum.maxVal);
     return;
     }
 
 printf("version: %d\n", bwf->version);
 printf("isCompressed: %s\n", (bwf->uncompressBufSize > 0 ? "yes" : "no"));
 printf("isSwapped: %d\n", bwf->isSwapped);
 printLabelAndLongNumber("primaryDataSize", bwf->unzoomedIndexOffset - bwf->unzoomedDataOffset);
 if (bwf->levelList != NULL)
     {
     long long indexEnd = bwf->levelList->dataOffset;
     printLabelAndLongNumber("primaryIndexSize", indexEnd - bwf->unzoomedIndexOffset);
     }
 printf("zoomLevels: %d\n", bwf->zoomLevels);
 if (optionExists("zooms"))
     {
     struct bbiZoomLevel *zoom;
     for (zoom = bwf->levelList; zoom != NULL; zoom = zoom->next)
 	printf("\t%d\t%d\n", zoom->reductionLevel, (int)(zoom->indexOffset - zoom->dataOffset));
     }
 struct bbiChromInfo *chrom, *chromList = bbiChromList(bwf);
 printf("chromCount: %d\n", slCount(chromList));
 if (optionExists("chroms"))
     for (chrom=chromList; chrom != NULL; chrom = chrom->next)
 	printf("\t%s %d %d\n", chrom->name, chrom->id, chrom->size);
 struct bbiSummaryElement sum = bbiTotalSummary(bwf);
 printLabelAndLongNumber("basesCovered", sum.validCount);
 printf("mean: %f\n", sum.sumData/sum.validCount);
 printf("min: %f\n", sum.minVal);
 printf("max: %f\n", sum.maxVal);
 printf("std: %f\n", calcStdFromSums(sum.sumData, sum.sumSquares, sum.validCount));
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 udcSetDefaultDir(optionVal("udcDir", udcDefaultDir()));
 if (argc != 2)
     usage();
 bigWigInfo(argv[1]);
+if (verboseLevel() > 1)
+    printVmPeak();
 return 0;
 }