a4c43c4be98b755b068d9bb9353014927014e384
markd
  Sat Feb 12 13:14:36 2011 -0800
add functions to clone mafAli objects
diff --git src/inc/maf.h src/inc/maf.h
index 1ad52e5..d337958 100644
--- src/inc/maf.h
+++ src/inc/maf.h
@@ -235,17 +235,24 @@
 void mafFlipStrand(struct mafAli *maf);
 /* Reverse complement maf. */
 
 void mafSrcDb(char *name, char *retDb, int retDbSize);
 /* Parse out just database part of name (up to but not including
  * first dot). If dot found, return entire name */
 
 boolean mafColumnEmpty(struct mafAli *maf, int col);
 /* Return TRUE if the column is all '-' or '.' */
 
 void mafStripEmptyColumns(struct mafAli *maf);
 /* Remove columns that are all '-' or '.' from  maf. */
 
 boolean isContigOrTandem(char status);
 /* is status MAF_CONTIG_STATUS or MAF_TANDEM_STATUS */
+
+struct mafComp *mafCompClone(struct mafComp *srcComp);
+/* clone a mafComp */
+
+struct mafAli *mafAliClone(struct mafAli *srcAli);
+/* clone a mafAli */
+
 #endif /* MAF_H */