File Changes for vsmalladi

v247_preview2 to v247_base (2011-02-08 to 2011-02-14) v247

• src/hg/encode/encodeMkGeoPkg/encodeMkGeoPkg
  • lines changed 31, context: html, text, full: html, text
    Removed references to wgEncodeHaibTfbsEcc1GRV0416102Etoh02AlnRep* replaced with wgEncodeHaibTfbsEcc1GrV0416102Etoh02AlnRep*
  • lines changed 31, context: html, text, full: html, text
    Accidently commited older version of this file. Adding back newest revisions.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 2, context: html, text, full: html, text
    Fixed b7ac3f99154b0b74b9fd59ee4f19a0684371e300 of overridding trackDb for Haib with metaDb.Fixed obj wgEncodeHaibTfbsK562ControlV0416101AlnRep1 that had dateResubmitted instead of dateSubmitted.
  • lines changed 97, context: html, text, full: html, text
    Removed references to wgEncodeHaibTfbsEcc1GRV0416102Etoh02AlnRep* replaced with wgEncodeHaibTfbsEcc1GrV0416102Etoh02AlnRep*
  • lines changed 11, context: html, text, full: html, text
    Revised Control Ids (Issue #2774) and (Issue #2773) for incorrect meta-object names for bam files.
  • lines changed 2, context: html, text, full: html, text
    Adding file index that was previously missing for the bam file.
  • lines changed 15, context: html, text, full: html, text
    Removed duplicate Antibody designations. Changed IRF4 -> IRF4_(M-17) and EBF -> EBF1_(C-8) to be consistent across all data.
  • lines changed 24, context: html, text, full: html, text
    Removed reference to obj wgEncodeHaibTfbsHepg2ControlPcr1xRawRep2 which doesn't exist in any submission directory. (Issue 2758).
  • lines changed 45, context: html, text, full: html, text
    Added 2 missing bam files submission 3505
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 494, context: html, text, full: html, text
    Fixed the accidently deletion of 12 meta-data objects, along with correcting dataVersion to be Jan 2011 Freeze.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 371, context: html, text, full: html, text
    Cleaned up meta-data and file mapping. (issue 2758)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
  • lines changed 20, context: html, text, full: html, text
    Updated the Tag's in trackDb for which protocols were changed. Issue #2731
  • lines changed 36760, context: html, text, full: html, text
    Fixed obj wgEncodeHaibTfbsK562ControlV0416101AlnRep1 that had dateResubmitted instead of dateSubmitted.
  • lines changed 36760, context: html, text, full: html, text
    Fixed b7ac3f99154b0b74b9fd59ee4f19a0684371e300 of overridding trackDb for Haib with metaDb.Fixed obj wgEncodeHaibTfbsK562ControlV0416101AlnRep1 that had dateResubmitted instead of dateSubmitted.
  • lines changed 19, context: html, text, full: html, text
    Removed duplicate Antibody designations. Changed IRF4 -> IRF4_(M-17) and EBF -> EBF1_(C-8) to be consistent across all data.
  • lines changed 10, context: html, text, full: html, text
    Removed reference to obj wgEncodeHaibTfbsHepg2ControlPcr1xRawRep2 which doesn't exist in any submission directory. (Issue 2758).
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra
  • lines changed 1, context: html, text, full: html, text
    Updated priority to 5 to be consistent with Release 1 of track.
  • lines changed 42, context: html, text, full: html, text
    Updated short and long-labels for new and Version 2 data.
  • lines changed 6, context: html, text, full: html, text
    Updated Short labels for Sk-N-SH_RA and WERI-Rb-1 to have consistent abbreviations with UW TFBS and UW Histone track.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
  • lines changed 1, context: html, text, full: html, text
    Updated priority of track to match release 1.
  • lines changed 215, context: html, text, full: html, text
    Updated short and long labels to track labeling standards for Jan Freeze Data and New versions of old data.
  • lines changed 14, context: html, text, full: html, text
    Updated Short labels for Sk-N-SH_RA and WERI-Rb-1 to have consistent abbreviations with UW TFBS and UW Histone track.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.html
  • lines changed 2, context: html, text, full: html, text
    Updated FTP link to downloads page and fixed linkto hgdownload instead of hgdownload-test. Fixed typo in link that linked to UWDnase instead of UWHistone downlaods page.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra
  • lines changed 1, context: html, text, full: html, text
    Updated ViewLimit for signal to be 1:100 instead of 1:10. Matches settings on other UW tracks.
  • lines changed 1, context: html, text, full: html, text
    Revereted viewLimit from 1:100 -> 1:10 on recomendation for QA.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra
  • lines changed 8, context: html, text, full: html, text
    For consitency updated the abreviation for SK-N-SH_RA from SKNSHRA -> SKRA