6031d05b102c1cb34c9e8394a8acf5809a8eca8f angie Mon Jan 31 16:19:37 2011 -0800 Track #34 (dbVar for human): Added new track type gvf with basichandlers in hgTracks and hgc. dbVar's GVF attributes are recognized, esp. var_type is used to color items, and items are sorted using the Parent keyword so that parents appear immediately before their children, and children are sorted by var_type. Attributes are displayed in hgc; need to do a bit better for the Start_range and End_range (e.g. translate "." to "inner start unknown" etc.). diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c index c9fccb5..e6d51c4 100644 --- src/hg/hgc/hgc.c +++ src/hg/hgc/hgc.c @@ -3799,30 +3799,34 @@ } else if (sameString(type, "altGraphX")) { doAltGraphXDetails(tdb,item); } //add bedDetail here else if (startsWith("bedDetail", type)) { doBedDetail(tdb, NULL, item); } else if (sameString(type, "interaction") ) { int num = 12; genericBedClick(conn, tdb, item, start, num); } + else if (startsWith("gvf", type)) + { + doGvf(tdb, item); + } #ifdef USE_BAM else if (sameString(type, "bam")) doBamDetails(tdb, item); #endif // USE_BAM } if (imagePath) { char *bigImagePath = trackDbSettingClosestToHome(tdb, ITEM_BIG_IMAGE_PATH); char *bothWords[2]; int shouldBeTwo = chopLine(imagePath, bothWords); if (shouldBeTwo != 2) errAbort("itemImagePath setting for %s track incorrect. Needs to be \"itemImagePath <path> <suffix>\".", tdb->track); printf("<BR><IMG SRC=\"%s/%s.%s\"><BR><BR>\n", bothWords[0], item, bothWords[1]); shouldBeTwo = chopLine(bigImagePath, bothWords); if (shouldBeTwo != 2)