6031d05b102c1cb34c9e8394a8acf5809a8eca8f
angie
  Mon Jan 31 16:19:37 2011 -0800
Track #34 (dbVar for human): Added new track type gvf with basichandlers in hgTracks and hgc.  dbVar's GVF attributes are recognized,
esp. var_type is used to color items, and items are sorted using
the Parent keyword so that parents appear immediately before their
children, and children are sorted by var_type.  Attributes are
displayed in hgc; need to do a bit better for the Start_range and
End_range (e.g. translate "." to "inner start unknown" etc.).

diff --git src/hg/hgc/makefile src/hg/hgc/makefile
index 860f435..4972add 100644
--- src/hg/hgc/makefile
+++ src/hg/hgc/makefile
@@ -1,37 +1,37 @@
 include ../../inc/common.mk
 
 L += -lm ${MYSQLLIBS} 
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = hgc
 
 O = $A.o bamClick.o bigBedClick.o dbRIP.o ccdsClick.o cgapSageClick.o encodeClick.o expClick.o \
-	hgdpClick.o lowelab.o mafClick.o makeItemsClick.o mgcClick.o \
+	gvfClick.o hgdpClick.o lowelab.o mafClick.o makeItemsClick.o mgcClick.o \
 	parClick.o peakClusters.o regMotif.o retroClick.o rnaFoldClick.o \
 	transMapClick.o txCdsInfo.o t2g.o virusClick.o wiggleClick.o \
 	wikiTrack.o variomeClick.o
 
 include ../../inc/cgi_build_rules.mk
 
 mgsc: compile
 	mv $A ${CGI_BIN}-mgsc/$A
 
 compile: $O 
 	${CC} ${CFLAGS} $O ${F64} ${MYLIBS} ${L}
 	mv ${AOUT} $A${EXE}
 
 my::
 	rm -rf ${CGI_BIN}-${USER}/hgcData ${CGI_BIN}-${USER}/lsSnpPdbChimera.py
 	rsync -ar --exclude=CVS/ --exclude=.svn/ --delete hgcData ../lib/lsSnpPdbChimera.py ${CGI_BIN}-${USER}/
 	chmod -R a+rX ${CGI_BIN}-${USER}/hgcData ${CGI_BIN}-${USER}/lsSnpPdbChimera.py
 
 alpha::
 	rm -fr ${CGI_BIN}/hgcData ${CGI_BIN}/lsSnpPdbChimera.py
 	rsync -ar --exclude=CVS/ --exclude=.svn/ --delete hgcData ../lib/lsSnpPdbChimera.py ${CGI_BIN}/
 	chmod -R a+rX,g+w ${CGI_BIN}/hgcData ${CGI_BIN}/lsSnpPdbChimera.py
 
 beta::
 	rm -fr ${CGI_BIN}-beta/hgcData ${CGI_BIN}-beta/lsSnpPdbChimera.py
 	rsync -ar --exclude=CVS/ --exclude=.svn/ --delete hgcData ../lib/lsSnpPdbChimera.py ${CGI_BIN}-beta/
 	chmod -R a+rX,g+w ${CGI_BIN}-beta/hgcData ${CGI_BIN}-beta/lsSnpPdbChimera.py