File Changes for cricket

v246_base to v247_preview (2011-01-25 to 2011-02-01) v247

• src/hg/encode/DAFs/2.0/cshlLongElements.daf
  • lines changed 76, context: html, text, full: html, text
    Building a new daf just for all of the elements files
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release1.notes
  • lines changed 153, context: html, text, full: html, text
    redid the notes file to reflect only signals for this release
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    added metadata for Suny Rip-seq
  • lines changed 1, context: html, text, full: html, text
    Added the new Methyl27 data with its metaData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 5832, context: html, text, full: html, text
    added metadata for V2 files
  • lines changed 83, context: html, text, full: html, text
    added missing metadata for sub 3473
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 12, context: html, text, full: html, text
    made the dataTypes all RnaSeq to be consistent
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 224, context: html, text, full: html, text
    made the dataTypes all RnaSeq to be consistent
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra
  • lines changed 5, context: html, text, full: html, text
    changed the views to RawData from RawData3
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 22, context: html, text, full: html, text
    added troubled submission into metaData for Kate's reporting
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl27.ra
  • lines changed 1475, context: html, text, full: html, text
    Added the new Methyl27 data with its metaData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 4, context: html, text, full: html, text
    added the metadata for Haib RRBS
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 25, context: html, text, full: html, text
    adding a Haib Rna Seq to the hg19
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 119, context: html, text, full: html, text
    changed Clusters to Signals, fixed supertrack setting, and maxWindowsToDraw according to Vanessa's wishes
  • lines changed 169, context: html, text, full: html, text
    Fixed the comment in issue#41, the broken link, the Alignments description, the title of the track, the missing meta data, the Clusters being called signals
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyRipSeq.ra
  • lines changed 951, context: html, text, full: html, text
    added metadata for Suny Rip-seq
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    made Riken have alpha release tags
  • lines changed 5, context: html, text, full: html, text
    changed release tags
  • lines changed 14, context: html, text, full: html, text
    adding a Haib Rna Seq to the hg19
  • lines changed 4, context: html, text, full: html, text
    Getting the Caltech new data roughly displayed on alpha
  • lines changed 2, context: html, text, full: html, text
    Added the new Methyl27 data with its metaData
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.ra
  • lines changed 1, context: html, text, full: html, text
    removed drag and drop at Tim's request
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 1639, context: html, text, full: html, text
    changed release tags
  • lines changed 21, context: html, text, full: html, text
    Getting the Caltech new data roughly displayed on alpha
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra
  • lines changed 54, context: html, text, full: html, text
    changed release tags
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra
  • lines changed 91, context: html, text, full: html, text
    changed short and long labels of incoming data
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra
  • lines changed 192, context: html, text, full: html, text
    Changed to have a drop down instead of a matrix
  • lines changed 98, context: html, text, full: html, text
    trying to display the view settings, not working yet
  • lines changed 173, context: html, text, full: html, text
    Changed back to bed 9 to view
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.ra
  • lines changed 575, context: html, text, full: html, text
    Added the new Methyl27 data with its metaData
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.html
  • lines changed 154, context: html, text, full: html, text
    adding new release for Methyl RRBS with new cell types and release information
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 27, context: html, text, full: html, text
    adding new release for Methyl RRBS with new cell types and release information
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra
  • lines changed 1, context: html, text, full: html, text
    changing defaults
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 830, context: html, text, full: html, text
    adding a Haib Rna Seq to the hg19
  • lines changed 31, context: html, text, full: html, text
    changed gtf to genepred as that is what it is called by the handler
  • lines changed 9, context: html, text, full: html, text
    Changing long labels
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.html
  • lines changed 9, context: html, text, full: html, text
    Fixed the comment in issue#41, the broken link, the Alignments description, the title of the track, the missing meta data, the Clusters being called signals
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 2, context: html, text, full: html, text
    Fixed the comment in issue#41, the broken link, the Alignments description, the title of the track, the missing meta data, the Clusters being called signals
  • lines changed 12, context: html, text, full: html, text
    getting the Riken new data roughly displayed on alpha
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra
  • lines changed 129, context: html, text, full: html, text
    changed Clusters to Signals, fixed supertrack setting, and maxWindowsToDraw according to Vanessa's wishes
  • lines changed 2, context: html, text, full: html, text
    Fixed the comment in issue#41, the broken link, the Alignments description, the title of the track, the missing meta data, the Clusters being called signals
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 7, context: html, text, full: html, text
    added bedlogR fileType
  • lines changed 1, context: html, text, full: html, text
    adding a Haib Rna Seq to the hg19
  • lines changed 1, context: html, text, full: html, text
    changed gtf to genepred as that is what it is called by the handler