3a525393f6a5c47fa08d91ef16c16927ed3cd33a hiram Thu Jan 27 13:08:39 2011 -0800 add sizeof and hgWiggle to userApp build diff --git src/makefile src/makefile index 847644e..5b23312 100644 --- src/makefile +++ src/makefile @@ -48,50 +48,55 @@ cd utils/nibFrag && ${MAKE} cd utils/faToNib && ${MAKE} cd utils/faToTwoBit && ${MAKE} cd utils/twoBitToFa && ${MAKE} cd utils/twoBitInfo && ${MAKE} cd isPcr && ${MAKE} cd blatz && ${MAKE} # all of these application makefiles have been updated to include use # of DESTDIR and BINDIR UTILS_APPLIST = bedClip bedGraphToBigWig bedToBigBed \ bigBedInfo bigBedSummary bigBedToBed \ bigWigInfo bigWigSummary bigWigToBedGraph bigWigToWig\ faCount faFrag faOneRecord faRandomize faSize faSomeRecords faToNib \ - faToTwoBit htmlCheck nibFrag stringify \ + faToTwoBit htmlCheck nibFrag sizeof stringify \ textHistogram twoBitInfo twoBitToFa userApps wigCorrelate wigToBigWig HG_APPLIST = bedSort liftUp liftOver bedItemOverlapCount encode/validateFiles \ ratStuff/mafsInRegion ratStuff/mafSpeciesSubset \ pslCDnaFilter genePredToGtf HG_UTILS_APPLIST = bedExtendRanges gff3ToGenePred gtfToGenePred overlapSelect +HG_HGWIGGLE_APP = hgWiggle + userApps: topLibs hgLib @for P in ${UTILS_APPLIST}; do \ ( cd utils/$${P} && echo utils/$${P} && ${MAKE} ) ; \ done @for P in ${HG_APPLIST}; do \ ( cd hg/$${P} && echo hg/$${P} && ${MAKE} ) ; \ done @for P in ${HG_UTILS_APPLIST}; do \ ( cd hg/utils/$${P} && echo hg/utils/$${P} && ${MAKE} ) ; \ done + @for P in ${HG_HGWIGGLE_APP}; do \ + ( cd hg/makeDb/hgLoadWiggle && echo hg/makeDb/hgLoadWiggle && ${MAKE} $${P} ) ; \ + done clean: @for D in ${DIRS} x; do \ if test "$$D" != "x" ; then \ ( cd $$D && echo $$D && ${MAKE} clean ) ;\ x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \ fi ;\ done cd lib && ${MAKE} clean cd hg && ${MAKE} clean cd hg && ${MAKE} clean_utils cd jkOwnLib && ${MAKE} clean cd utils && ${MAKE} clean cd webBlat && ${MAKE} clean cd isPcr && ${MAKE} clean