File Changes for cricket

v247_preview to v247_preview2 (2011-02-01 to 2011-02-08) v247

• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    This is the fixed metadata for Suny Albany GeneST. There are no weird duplicates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 308, context: html, text, full: html, text
    Fixed a few protocol ID's to say t and added biorep where missing
  • lines changed 409, context: html, text, full: html, text
    Deleted suspect data from metaDb
  • lines changed 2730, context: html, text, full: html, text
    removed AllRawSigs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 603, context: html, text, full: html, text
    Cleaning up labels, putting some data in the attic, fixing settings
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 91, context: html, text, full: html, text
    Changeing GIS to Gis
  • lines changed 127, context: html, text, full: html, text
    Correcting Gis to GIS
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 15, context: html, text, full: html, text
    updating post ENCODE June 2010 Freeze to Jan 2011 Freeze
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
  • lines changed 15, context: html, text, full: html, text
    Changed post Jun Freeze to Jan Freeze
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 9, context: html, text, full: html, text
    Fixing the CAGE to Cage
  • lines changed 2, context: html, text, full: html, text
    error in origAssembly fixed
  • lines changed 9, context: html, text, full: html, text
    updating post ENCODE June 2010 Freeze to Jan 2011 Freeze
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 475, context: html, text, full: html, text
    This is the fixed metadata for Suny Albany GeneST. There are no weird duplicates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra
  • lines changed 24, context: html, text, full: html, text
    I am checking this in broken for Tim to look at
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunySwitchgear.ra
  • lines changed 3, context: html, text, full: html, text
    Changed metadata so that the matrix links would work
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 4663, context: html, text, full: html, text
    updating post ENCODE June 2010 Freeze to Jan 2011 Freeze
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeYaleRnaSeq.ra
  • lines changed 5, context: html, text, full: html, text
    Changing the new treatments to what was finally registered
  • lines changed 2, context: html, text, full: html, text
    Changing the new treatments to what was finally registered
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 51, context: html, text, full: html, text
    added a new composite for SUNY
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 2, context: html, text, full: html, text
    Changed the viewlimits for the minus strand to be negative
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra
  • lines changed 15, context: html, text, full: html, text
    Changed the viewlimits for the minus strand to be negative
  • lines changed 21, context: html, text, full: html, text
    Changed the viewing limits to match hg18
  • lines changed 5, context: html, text, full: html, text
    Added autoscale to clean up the data
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 10, context: html, text, full: html, text
    Changed the bam display settings to the lab requests
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra
  • lines changed 462, context: html, text, full: html, text
    Cleaning up labels, putting some data in the attic, fixing settings
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra
  • lines changed 199, context: html, text, full: html, text
    changing back to matrix as lab request
  • lines changed 2, context: html, text, full: html, text
    Changed the Tier1 labels
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.ra
  • lines changed 35, context: html, text, full: html, text
    Added matrix, fixed short labels
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 15, context: html, text, full: html, text
    Changed defualt settings to Flo request and fixed html
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 7, context: html, text, full: html, text
    Fixing the display for tracks from sub3084, changing some display settings
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.html
  • lines changed 1, context: html, text, full: html, text
    Fixed the configuration settings for Vanessa
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.ra
  • lines changed 3, context: html, text, full: html, text
    Fixed the configuration settings for Vanessa
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.html
  • lines changed 154, context: html, text, full: html, text
    added a new composite for SUNY
  • lines changed 0, context: html, text, full: html, text
    dos2unix
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.ra
  • lines changed 438, context: html, text, full: html, text
    added a new composite for SUNY
  • lines changed 7, context: html, text, full: html, text
    Changing display settings
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.ra
  • lines changed 9, context: html, text, full: html, text
    Changed metadata so that the matrix links would work